SMTL ID : 6jhp.1

Crystal structure of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

homo-tetramer

Ligands

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 6 residues within 4Å: Chain A: D.409, R.483, R.484 Chain D: V.93, N.94, G.95 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain A Hydrogen bonds: D:N.94, D:G.95, A:D.409, A:R.483, A:R.484, A:N.521 TRS.2: 6 residues within 4Å: Chain A: V.93, N.94, G.95 Chain D: D.409, R.483, R.484 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:D.409, D:R.483, D:N.521, A:N.94, A:G.95 TRS.3: 6 residues within 4Å: Chain B: V.93, N.94, G.95 Chain C: D.409, R.483, R.484 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:N.94, B:G.95, C:D.409, C:R.483, C:N.521 TRS.4: 7 residues within 4Å: Chain B: D.409, R.483, R.484, N.521 Chain C: V.93, N.94, G.95 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:D.409, B:R.483, B:N.521, C:N.94, C:G.95 Water bridges: C:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Crystal structure and phylogenetic analysis of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila. To be published

Release Date

2020-05-20

Peptides

Alpha-galactosidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Alpha-galactosidase