SMTL ID : 6jhu.1

Crystal Structure Of Biotin Protein Ligase From Leishmania Major in complex with Biotinyl-5-AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

2 x BT5: BIOTINYL-5-AMP(Non-covalent)

BT5.1: 29 residues within 4Å: Chain A: S.37, T.38, M.39, Q.61, G.64, R.65, G.66, T.67, R.70, T.71, W.72, T.73, Y.80, M.81, T.82, N.143, D.144, K.151, G.154, T.155, L.156, G.167, I.168, G.169, N.171, P.176, Q.177, D.180, A.185 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:W.72, A:W.72, A:L.156 Hydrogen bonds: A:T.38, A:T.38, A:M.39, A:Q.61, A:R.65, A:R.65, A:T.67, A:T.67, A:R.70, A:T.73, A:T.73, A:T.82, A:N.143, A:K.151, A:N.171, A:Q.177 Salt bridges: A:R.70, A:K.151, A:K.151 pi-Stacking: A:W.72 BT5.3: 29 residues within 4Å: Chain B: S.37, T.38, M.39, Q.61, G.64, R.65, G.66, T.67, R.70, T.71, W.72, T.73, Y.80, M.81, T.82, N.143, D.144, K.151, G.154, T.155, L.156, G.167, I.168, G.169, N.171, P.176, Q.177, D.180, A.185 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:W.72, B:W.72, B:L.156 Hydrogen bonds: B:T.38, B:T.38, B:M.39, B:Q.61, B:R.65, B:R.65, B:T.67, B:T.67, B:R.70, B:T.73, B:T.73, B:N.143, B:K.151, B:N.171, B:Q.177, B:D.180 Salt bridges: B:R.70, B:K.151, B:K.151 pi-Stacking: B:W.72

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.140, H.242, R.244 Chain B: R.249 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.249, A:K.140 Hydrogen bonds: A:R.244 SO4.4: 4 residues within 4Å: Chain A: R.249 Chain B: K.140, H.242, R.244 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.242, B:R.244 Salt bridges: B:K.140, A:R.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajak, M. et al., Leishmania major biotin protein ligase forms a unique cross-handshake dimer. Acta Crystallogr.,Sect.D (2021)

Release Date

2020-04-08

Peptides

Biotin/lipoate protein ligase-like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Biotin/lipoate protein ligase-like protein

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