- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x U- U- U- U- U- A- A- U: RNA (5'-R(P*UP*UP*UP*UP*UP)-3')(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 22 residues within 4Å:- Chain A: V.187, P.188, G.189, S.190, G.191, K.192, S.193, A.194, R.311, R.312, G.384, T.386, E.418, W.450
- Ligands: MG.3, AL.4, F.5, F.6, F.7, F.8, CL.10, GOL.12
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:G.189, A:S.190, A:G.191, A:K.192, A:S.193, A:A.194, A:G.384, A:T.386, A:T.386
- Water bridges: A:K.197, A:R.312, A:R.312, A:R.416, A:E.418
- Salt bridges: A:K.192, A:K.197, A:R.312, A:R.312
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x AL: ALUMINUM ION(Non-covalent)
- 4 x F: FLUORIDE ION(Non-covalent)
F.5: 9 residues within 4Å:- Chain A: R.312, G.384, R.416
- Ligands: ADP.2, MG.3, AL.4, F.6, F.7, F.8
No protein-ligand interaction detected (PLIP)F.6: 8 residues within 4Å:- Chain A: P.188, K.192, Q.283
- Ligands: ADP.2, AL.4, F.5, F.7, F.8
No protein-ligand interaction detected (PLIP)F.7: 9 residues within 4Å:- Chain A: S.193, E.253, G.384
- Ligands: ADP.2, MG.3, AL.4, F.5, F.6, F.8
No protein-ligand interaction detected (PLIP)F.8: 10 residues within 4Å:- Chain A: P.188, G.189, Q.283, R.312, R.416
- Ligands: ADP.2, AL.4, F.5, F.6, F.7
No protein-ligand interaction detected (PLIP)- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.11: 6 residues within 4Å:- Chain A: Y.403, A.404, S.405, P.430, W.431, T.434
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.403, A:S.405, A:T.434
- Water bridges: A:P.430
GOL.12: 3 residues within 4Å:- Chain A: N.198, Q.224
- Ligands: ADP.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.198
- Water bridges: A:Q.224
GOL.13: 5 residues within 4Å:- Chain A: D.81, Y.177, I.179, V.181, I.266
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.81, A:I.179
- Water bridges: A:Y.177
GOL.14: 7 residues within 4Å:- Chain A: S.88, V.92, A.165, R.172, D.235, L.239, T.261
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.88, A:R.172, A:R.172, A:D.235
- Water bridges: A:T.261
GOL.15: 4 residues within 4Å:- Chain A: D.135, D.137, A.147, A.148
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.148
GOL.16: 4 residues within 4Å:- Chain A: E.335, Y.336, N.337, K.338
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.337
GOL.17: 5 residues within 4Å:- Chain A: Y.161, K.211, E.212
- Ligands: U-U-U-U-U-A-A-U.1, U-U-U-U-U-A-A-U.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.161, A:Y.161, A:E.212, A:E.212
- Water bridges: A:E.212
GOL.18: 4 residues within 4Å:- Chain A: F.164, L.239, N.240
- Ligands: U-U-U-U-U-A-A-U.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.164, A:N.240
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Law, Y.S. et al., Structural insights into RNA recognition by the Chikungunya virus nsP2 helicase. Proc.Natl.Acad.Sci.USA (2019)
- Release Date
- 2019-04-10
- Peptides
- helicase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x U- U- U- U- U- A- A- U: RNA (5'-R(P*UP*UP*UP*UP*UP)-3')(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x AL: ALUMINUM ION(Non-covalent)
- 4 x F: FLUORIDE ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Law, Y.S. et al., Structural insights into RNA recognition by the Chikungunya virus nsP2 helicase. Proc.Natl.Acad.Sci.USA (2019)
- Release Date
- 2019-04-10
- Peptides
- helicase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B