SMTL ID : 6jjt.1

Crystal structure of an enzyme from Penicillium herquei in condition1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

homo-tetramer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: A.98, N.99, T.117, S.118, S.119 Chain C: Y.42, Q.44 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:Q.44, A:G.97, A:N.99 Water bridges: A:N.99 PEG.2: 8 residues within 4Å: Chain B: A.98, N.99, T.117, S.118, S.119 Chain D: I.41, Y.42, Q.44 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:N.99, D:Q.44 Water bridges: B:N.99, B:E.120, B:E.120 PEG.3: 6 residues within 4Å: Chain B: T.73, L.75, D.87, A.88, H.89 Chain D: H.89 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:L.75, B:H.89, B:H.89, D:H.89 Water bridges: B:A.88, B:H.89

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 9 residues within 4Å: Chain A: T.117, S.118 Chain B: Q.48, D.81, T.83 Chain C: D.43, S.45, Q.48, K.50 13 PLIP interactions: 5 interactions with chain B, 6 interactions with chain C, 2 interactions with chain A Hydrogen bonds: B:T.83, C:S.45, C:S.45, C:Q.48 Water bridges: B:Q.48, B:D.81, B:T.83, B:T.83, C:D.43, C:K.50, A:D.116, A:D.116 Salt bridges: C:K.50 CIT.5: 4 residues within 4Å: Chain C: N.64, K.121, Y.122, W.124 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:W.124 Water bridges: C:K.121 Salt bridges: C:K.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, Y. et al., Crystal structure and proposed mechanism of an enantioselective hydroalkoxylation enzyme from Penicillium herquei. Biochem.Biophys.Res.Commun. (2019)

Release Date

2020-01-01

Peptides

PhnH: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PhnH

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