SMTL ID : 6jk6.1

Crystal structure of human chitotriosidase-1 (hCHIT) catalytic domain in complex with compound 2-8-s2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

2 x BV0: 6-azanyl-11-methyl-2-oxidanylidene-7-[[(2R)-oxolan-2-yl]methyl]-N-(pyridin-3-ylmethyl)-1,9-diaza-7-azoniatricyclo[8.4.0.0^{3,8}]tetradeca-3(8),4,6,9,11,13-hexaene-5-carboxamide(Non-covalent)

BV0.1: 14 residues within 4Å: Chain A: Y.6, F.37, W.78, D.117, E.119, Y.120, Q.124, A.162, Y.169, M.189, Y.191, E.276, W.337 Ligands: BV0.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.37, A:W.78, A:W.78, A:A.162 Hydrogen bonds: A:E.119, A:Y.120, A:Y.191, A:R.248 Water bridges: A:W.78, A:W.78, A:R.248 pi-Stacking: A:W.78, A:W.78, A:W.337 BV0.2: 5 residues within 4Å: Chain A: Y.169, D.192, W.197, R.248 Ligands: BV0.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.169, A:Y.169, A:D.192, A:W.197 pi-Stacking: A:W.197, A:W.197, A:W.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, X. et al., A Series of Compounds Bearing a Dipyrido-Pyrimidine Scaffold Acting as Novel Human and Insect Pest Chitinase Inhibitors. J.Med.Chem. (2020)

Release Date

2020-02-19

Peptides

Chitotriosidase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitotriosidase-1

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