SMTL ID : 6jkw.1 (1 other biounit)

Seleno-methionine PNGM-1 from deep-sea sediment metagenome

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.90, D.94, H.95, D.209, H.278 Ligands: ZN.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.94, A:H.95, A:D.209, A:D.209, A:H.278 ZN.2: 5 residues within 4Å: Chain A: H.90, H.92, H.187, D.209 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.90, A:H.92, A:H.187, A:D.209 ZN.3: 5 residues within 4Å: Chain B: D.94, H.95, D.209, H.278 Ligands: ZN.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.94, B:H.95, B:D.209, B:D.209, B:H.278 ZN.4: 5 residues within 4Å: Chain B: H.90, H.92, H.187, D.209 Ligands: ZN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.90, B:H.92, B:H.187, B:D.209 ZN.5: 5 residues within 4Å: Chain C: D.94, H.95, D.209, H.278 Ligands: ZN.6 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.94, C:H.95, C:D.209, C:H.278 ZN.6: 6 residues within 4Å: Chain C: H.90, H.92, H.95, H.187, D.209 Ligands: ZN.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.90, C:H.92, C:H.187, C:D.209 ZN.7: 6 residues within 4Å: Chain D: H.90, D.94, H.95, D.209, H.278 Ligands: ZN.8 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.94, D:H.95, D:D.209, D:H.278 ZN.8: 6 residues within 4Å: Chain D: H.90, H.92, H.95, H.187, D.209 Ligands: ZN.7 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.90, D:H.92, D:H.187, D:D.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, L.W. et al., PNGM 1 a novel subclass B3 metallo beta lactamase from a deep sea sediment metagenome. Journal of Global Antimicrobial Resistance (2018)

Release Date

2019-04-17

Peptides

Metallo-beta-lactamases PNGM-1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
F

D
G

Metallo-beta-lactamases PNGM-1

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