SMTL ID : 6jmn.1

Crystal structure of Ostrinia furnacalis Chitinase h complexed with compound 2-8-s2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x BV0: 6-azanyl-11-methyl-2-oxidanylidene-7-[[(2R)-oxolan-2-yl]methyl]-N-(pyridin-3-ylmethyl)-1,9-diaza-7-azoniatricyclo[8.4.0.0^{3,8}]tetradeca-3(8),4,6,9,11,13-hexaene-5-carboxamide(Non-covalent)

BV0.1: 11 residues within 4Å: Chain A: Y.156, F.184, W.268, D.306, E.308, M.381, Y.383, D.384, W.389, R.439, W.532 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.268, A:Y.383, A:W.389, A:W.532, A:W.532 Hydrogen bonds: A:D.384, A:D.384, A:R.439, A:R.439 pi-Stacking: A:Y.156, A:W.268, A:W.268, A:W.268, A:W.389, A:W.389 pi-Cation interactions: A:R.439

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: W.389, N.391, T.458 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain A: D.392, G.446, N.456 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, X. et al., A Series of Compounds Bearing a Dipyrido-Pyrimidine Scaffold Acting as Novel Human and Insect Pest Chitinase Inhibitors. J.Med.Chem. (2020)

Release Date

2020-05-06

Peptides

Chitinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitinase

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