SMTL ID : 6jow.1 (1 other biounit)

Exo-beta-D-glucosaminidase from Pyrococcus furiosus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.341, E.344 Chain B: E.341, E.344 No protein-ligand interaction detected (PLIP)

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 9 residues within 4Å: Chain A: C.85, E.87, E.163, E.168, L.266, E.290, W.292, F.295, E.331 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.266, A:W.292 Water bridges: A:G.86, A:E.87, A:E.168, A:E.168, A:E.168 MPD.3: 5 residues within 4Å: Chain A: N.468, D.624, R.634, V.638, R.641 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.468, A:R.641 Water bridges: A:V.638 MPD.4: 3 residues within 4Å: Chain B: T.56, H.57, P.58 No protein-ligand interaction detected (PLIP) MPD.5: 9 residues within 4Å: Chain B: C.85, E.87, E.163, E.168, L.266, E.290, W.292, F.295, E.331 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.266 Water bridges: B:G.86, B:E.87, B:E.163, B:E.168, B:E.168, B:E.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mine, S. et al., Exo-beta-D-glucosaminidase from Pyrococcus furiosus. To Be Published

Release Date

2020-03-25

Peptides

Beta-galactosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-galactosidase

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