SMTL ID : 6jpe.1

Crystal structure of FGFR4 kinase domain with irreversible inhibitor 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x BYU: N-[2-[[6-[2-[[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]amino]pyridin-3-yl]pyrimidin-4-yl]amino]-3-methyl-phenyl]prop-2-enamide(Covalent)

BYU.1: 19 residues within 4Å: Chain A: L.31, V.39, R.41, T.57, A.59, K.61, E.78, M.82, I.92, V.106, V.108, E.109, C.110, A.111, G.114, L.177, A.187, D.188, F.189 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:T.57, A:L.177, A:L.177 Hydrogen bonds: A:R.41, A:E.78, A:A.111, A:A.111, A:A.111, A:D.188, A:D.188

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.174, T.204, S.205, N.206, R.208 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.204, A:T.204, A:S.205, A:N.206, A:N.206 Water bridges: A:N.115, A:R.174, A:R.208 Salt bridges: A:R.174 SO4.3: 4 residues within 4Å: Chain A: R.121, R.124, G.245, S.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.246 Water bridges: A:R.121, A:R.121 Salt bridges: A:R.121, A:R.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rezende Miranda, R. et al., Development of a Potent and Specific FGFR4 Inhibitor for the Treatment of Hepatocellular Carcinoma. J.Med.Chem. (2020)

Release Date

2020-05-06

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 4

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