SMTL ID : 6jpj.1

Crystal structure of FGF401 in complex of FGFR4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

1 x FGF: N-[5-cyano-4-(2-methoxyethylamino)pyridin-2-yl]-7-methanoyl-6-[(4-methyl-2-oxidanylidene-piperazin-1-yl)methyl]-3,4-dihydro-2H-1,8-naphthyridine-1-carboxamide(Covalent)

FGF.1: 15 residues within 4Å: Chain A: L.31, V.39, R.41, T.57, V.58, A.59, K.61, I.92, V.108, E.109, C.110, A.111, A.112, G.114, L.177 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:L.177 Hydrogen bonds: A:R.41, A:A.111 Water bridges: A:D.188

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.174, T.204, N.206, R.208 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.204, A:T.204, A:N.206, A:N.206, A:R.208 Water bridges: A:R.208 Salt bridges: A:R.174 SO4.3: 4 residues within 4Å: Chain A: R.121, R.124, G.245, S.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.246 Water bridges: A:R.124, A:R.124 Salt bridges: A:R.121, A:R.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Z. et al., Characterization of FGF401 as a reversible covalent inhibitor of fibroblast growth factor receptor 4. Chem.Commun.(Camb.) (2019)

Release Date

2019-05-15

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 4

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