SMTL ID : 6jpk.1

Crystal structure of S. pombe aspartate aminotransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: S.107, G.108, T.109, S.252, A.254, R.263 Chain B: Y.70 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.107, A:S.107, A:S.107, A:G.108, A:T.109, A:S.252, B:Y.70 Water bridges: A:R.263, B:S.293 Salt bridges: A:K.255, A:R.263 PO4.3: 7 residues within 4Å: Chain A: Y.70 Chain B: S.107, G.108, T.109, S.252, A.254, R.263 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.107, B:G.108, B:T.109, B:T.109, B:S.252, B:S.252, A:Y.70 Water bridges: B:K.255, B:K.255, A:S.293, A:N.294 Salt bridges: B:K.255, B:R.263

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: R.89, L.307, N.308, S.309, P.310, F.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.89, A:S.309 GOL.4: 6 residues within 4Å: Chain B: R.89, L.307, N.308, S.309, P.310, F.313 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.89, B:R.89, B:S.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, S.Y. et al., Crystal structure of L-aspartate aminotransferase from Schizosaccharomyces pombe. Plos One (2019)

Release Date

2019-09-11

Peptides

Aspartate aminotransferase, cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartate aminotransferase, cytoplasmic