SMTL ID : 6jpw.2 (3 other biounits)

Crystal structure of Zika NS2B-NS3 protease with compound 1C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SER- C0F- GLY- LYS- ARG- LYS: SER-C0F-GLY-LYS-ARG-LYS(Non-covalent)

SER-C0F-GLY-LYS-ARG-LYS.1: 22 residues within 4Å: Chain A: S.38, G.39, D.40, F.41, S.42, L.43 Chain B: H.52, D.76, D.130, Y.131, P.132, A.133, G.134, T.135, S.136, Y.151, G.152, N.153, G.154, V.155, V.156, Y.162 25 PLIP interactions: 20 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:Y.151, B:V.156, B:Y.162, B:Y.162, B:Y.162 Hydrogen bonds: B:Y.131, B:G.134, B:T.135, B:S.136, B:S.136, B:G.152, B:N.153, B:G.154, B:G.154, B:V.156, A:G.39, A:L.43 Water bridges: B:D.76, B:D.76, B:D.130, A:S.38, A:F.41 Salt bridges: B:H.52, B:D.76, A:D.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nitsche, C. et al., Biocompatible Macrocyclization between Cysteine and 2-Cyanopyridine Generates Stable Peptide Inhibitors. Org.Lett. (2019)

Release Date

2019-06-26

Peptides

Serine protease subunit NS2B: A
NS3 protease: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Serine protease subunit NS2B

NS3 protease

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