SMTL ID : 6jq1.1

Crystal Structure of DdrO from Deinococcus geothermalis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

5 x LI: LITHIUM ION(Non-covalent)

LI.1: 2 residues within 4Å: Chain A: T.60, V.61 No protein-ligand interaction detected (PLIP) LI.2: 2 residues within 4Å: Chain B: S.31, V.32 No protein-ligand interaction detected (PLIP) LI.3: 3 residues within 4Å: Chain A: F.70 Chain B: T.60, V.61 No protein-ligand interaction detected (PLIP) LI.4: 5 residues within 4Å: Chain B: L.10, R.14, L.35, E.39, Y.57 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:L.10, B:E.39, B:Y.57 LI.5: 3 residues within 4Å: Chain A: N.44 Chain B: L.47, E.48 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, H. et al., Structure and DNA damage-dependent derepression mechanism for the XRE family member DG-DdrO. Nucleic Acids Res. (2019)

Release Date

2019-08-28

Peptides

Transcriptional regulator, XRE family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcriptional regulator, XRE family