SMTL ID : 6jqa.1

Crystal structure of phyllogen, a phyllody inducing effector protein of phytoplasma.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

19 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: E.42, I.45, Q.46, K.62 Ligand excluded by PLIP IOD.2: 5 residues within 4Å: Chain A: E.21, I.24, I.25 Ligands: IOD.3, IOD.5 Ligand excluded by PLIP IOD.3: 6 residues within 4Å: Chain A: I.25, K.28, Y.29 Chain B: V.36 Ligands: IOD.2, IOD.5 Ligand excluded by PLIP IOD.4: 5 residues within 4Å: Chain B: E.21, I.24, I.25, K.28 Ligands: IOD.8 Ligand excluded by PLIP IOD.5: 5 residues within 4Å: Chain A: I.25 Chain B: V.36 Ligands: IOD.2, IOD.3, IOD.6 Ligand excluded by PLIP IOD.6: 5 residues within 4Å: Chain B: I.39, N.40, R.43 Ligands: IOD.5, IOD.7 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain B: R.43 Ligands: IOD.6 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain A: V.36 Chain B: I.25 Ligands: IOD.4 Ligand excluded by PLIP IOD.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.10: 5 residues within 4Å: Chain A: I.15, Y.18 Chain B: L.58 Chain D: L.82 Ligands: IOD.11 Ligand excluded by PLIP IOD.11: 6 residues within 4Å: Chain A: N.14, Y.18 Chain B: E.44, N.54, L.58 Ligands: IOD.10 Ligand excluded by PLIP IOD.12: 4 residues within 4Å: Chain C: E.42, I.45, L.59, K.62 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain C: Q.46, Q.47 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain D: K.38, I.69 Ligands: IOD.15 Ligand excluded by PLIP IOD.15: 5 residues within 4Å: Chain D: E.66, I.69, K.73 Ligands: IOD.14, IOD.19 Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain D: E.42, R.43 Ligand excluded by PLIP IOD.17: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.18: 6 residues within 4Å: Chain B: N.67, L.68, N.71 Chain D: N.67, L.68, N.71 Ligand excluded by PLIP IOD.19: 4 residues within 4Å: Chain D: I.69, H.70, K.73 Ligands: IOD.15 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iwabuchi, N. et al., Crystal structure of phyllogen, a phyllody-inducing effector protein of phytoplasma. Biochem.Biophys.Res.Commun. (2019)

Release Date

2019-05-15

Peptides

Phytoplasmal effector causing phyllody 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Phytoplasmal effector causing phyllody 1