SMTL ID : 6jqm.1

Structure of PaaZ with NADPH

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 22 residues within 4Å: Chain A: R.27, I.161, N.162, A.163, F.164, N.165, K.188, P.189, A.190, T.191, F.237, T.238, G.239, S.240, T.243, L.247, A.264, D.265, C.302, Q.349, E.402, F.404 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.163, A:F.164, A:F.404 Hydrogen bonds: A:N.162, A:N.165, A:K.188, A:T.191, A:T.191, A:S.240, A:S.240, A:T.243, A:Q.349, A:E.402 Salt bridges: A:R.27, A:K.188 NDP.2: 22 residues within 4Å: Chain B: R.27, I.161, N.162, A.163, F.164, N.165, K.188, P.189, A.190, T.191, F.237, T.238, G.239, S.240, T.243, L.247, A.264, D.265, C.302, Q.349, E.402, F.404 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.163, B:F.164 Hydrogen bonds: B:N.162, B:N.165, B:K.188, B:T.191, B:T.191, B:S.240, B:D.265, B:Q.349, B:E.402 Salt bridges: B:R.27, B:K.188 NDP.3: 21 residues within 4Å: Chain C: R.27, I.161, N.162, A.163, F.164, N.165, K.188, P.189, A.190, T.191, F.237, T.238, G.239, S.240, T.243, L.247, A.264, D.265, C.302, E.402, F.404 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:A.163, C:F.164, C:F.404 Hydrogen bonds: C:N.162, C:N.165, C:K.188, C:T.191, C:T.191, C:S.240, C:S.240, C:T.243, C:Q.349, C:E.402 Salt bridges: C:R.27, C:K.188 NDP.4: 22 residues within 4Å: Chain D: R.27, I.161, N.162, A.163, F.164, N.165, K.188, P.189, A.190, T.191, F.237, T.238, G.239, S.240, T.243, L.247, A.264, D.265, C.302, Q.349, E.402, F.404 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:A.163, D:F.164 Hydrogen bonds: D:N.162, D:K.188, D:T.191, D:T.191, D:S.240, D:D.265, D:Q.349, D:E.402 Salt bridges: D:R.27, D:K.188 NDP.5: 22 residues within 4Å: Chain E: R.27, I.161, N.162, A.163, F.164, N.165, K.188, P.189, A.190, T.191, F.237, T.238, G.239, S.240, T.243, L.247, A.264, D.265, C.302, Q.349, E.402, F.404 15 PLIP interactions: 15 interactions with chain E Hydrophobic interactions: E:A.163, E:F.164, E:F.404 Hydrogen bonds: E:N.162, E:N.165, E:K.188, E:T.191, E:T.191, E:S.240, E:S.240, E:T.243, E:Q.349, E:E.402 Salt bridges: E:R.27, E:K.188 NDP.6: 21 residues within 4Å: Chain F: R.27, I.161, N.162, A.163, F.164, N.165, K.188, P.189, A.190, T.191, F.237, T.238, G.239, S.240, T.243, L.247, A.264, D.265, C.302, E.402, F.404 13 PLIP interactions: 13 interactions with chain F Hydrophobic interactions: F:A.163, F:F.164 Hydrogen bonds: F:N.162, F:N.165, F:K.188, F:T.191, F:T.191, F:S.240, F:S.240, F:D.265, F:E.402 Salt bridges: F:R.27, F:K.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sathyanarayanan, N. et al., Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway. Nat Commun (2019)

Release Date

2019-09-11

Peptides

Bifunctional protein PaaZ: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Bifunctional protein PaaZ

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