SMTL ID : 6jqq.1

KatE H392C from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: R.125, V.127, H.128, R.165, G.184, A.186, V.199, G.200, N.201, F.206, F.214, I.274, H.275, F.391, L.407, R.411, S.414, Y.415, T.418, Q.419, R.422 Chain D: I.114, D.118 23 PLIP interactions: 22 interactions with chain A, 1 interactions with chain D, Hydrophobic interactions: A:H.128, A:V.199, A:N.201, A:F.206, A:F.214, A:F.214, A:F.214, A:F.214, A:L.407, A:L.407, A:R.411, A:Y.415, A:Y.415, D:I.114 Hydrogen bonds: A:Q.419 Salt bridges: A:R.125, A:R.125, A:R.165, A:R.422 pi-Stacking: A:H.128, A:F.214 pi-Cation interactions: A:R.411 Metal complexes: A:Y.415 HEM.2: 21 residues within 4Å: Chain B: R.125, V.127, H.128, R.165, G.184, V.199, G.200, N.201, F.206, F.214, I.274, H.275, F.391, L.407, R.411, S.414, Y.415, T.418, Q.419, R.422 Chain C: D.118 25 PLIP interactions: 25 interactions with chain B, Hydrophobic interactions: B:V.127, B:H.128, B:V.199, B:N.201, B:F.206, B:F.206, B:F.214, B:F.214, B:F.214, B:F.214, B:L.407, B:R.411, B:Y.415, B:T.418 Hydrogen bonds: B:T.418, B:Q.419 Water bridges: B:T.418 Salt bridges: B:R.125, B:R.125, B:R.165, B:R.422 pi-Stacking: B:H.128, B:F.214 pi-Cation interactions: B:R.411 Metal complexes: B:Y.415 HEM.3: 23 residues within 4Å: Chain B: D.118 Chain C: R.125, V.127, H.128, R.165, G.184, A.186, V.199, G.200, N.201, F.206, F.214, I.274, H.275, F.391, L.407, G.410, R.411, S.414, Y.415, T.418, Q.419, R.422 24 PLIP interactions: 24 interactions with chain C, Hydrophobic interactions: C:V.127, C:H.128, C:A.186, C:V.199, C:F.206, C:F.206, C:F.214, C:F.214, C:F.214, C:F.214, C:I.274, C:L.407, C:R.411, C:Y.415, C:Y.415 Hydrogen bonds: C:Q.419 Salt bridges: C:R.125, C:R.125, C:R.165, C:R.422 pi-Stacking: C:H.128, C:F.214 pi-Cation interactions: C:R.411 Metal complexes: C:Y.415 HEM.5: 22 residues within 4Å: Chain A: D.118 Chain D: R.125, V.127, H.128, R.165, G.184, A.186, V.199, G.200, N.201, F.206, F.214, I.274, H.275, F.391, L.407, R.411, S.414, Y.415, T.418, Q.419, R.422 23 PLIP interactions: 23 interactions with chain D, Hydrophobic interactions: D:V.127, D:H.128, D:V.199, D:F.206, D:F.206, D:F.214, D:F.214, D:F.214, D:F.214, D:L.407, D:L.407, D:R.411, D:Y.415, D:T.418 Hydrogen bonds: D:Q.419 Salt bridges: D:R.125, D:R.165, D:R.422 pi-Stacking: D:H.128, D:F.206, D:F.214 pi-Cation interactions: D:R.411 Metal complexes: D:Y.415

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain B: E.224, W.227, V.535 Chain C: Q.48, P.49, T.50 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:T.50, B:E.224 Water bridges: B:D.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.B. et al., KatE H392C from Escherichia coli. To Be Published

Release Date

2020-04-01

Peptides

Catalase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Catalase