SMTL ID : 6jqx.1

Crystal structure of a hydrogenase from Trichosporon moniliiforme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

2 x SAL: 2-HYDROXYBENZOIC ACID(Non-covalent)

SAL.1: 9 residues within 4Å: Chain A: E.10, Y.29, H.171, P.193, F.197, H.226, D.300, Y.303 Ligands: ZN.2 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.300 Salt bridges: A:H.171, A:H.226 pi-Stacking: A:Y.29, A:F.197, A:Y.303 Water bridges: B:R.237 SAL.3: 10 residues within 4Å: Chain A: W.241 Chain B: E.10, Y.29, H.171, P.193, F.197, H.226, D.300, Y.303 Ligands: ZN.4 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.29, B:P.193, B:Y.303, A:W.241 Hydrogen bonds: B:D.300 Salt bridges: B:H.171, B:H.226 pi-Stacking: B:Y.29, B:F.197, B:Y.303

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: E.10, H.171, D.300 Ligands: SAL.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.10, A:H.171, A:D.300, A:D.300, H2O.1 ZN.4: 4 residues within 4Å: Chain B: E.10, H.171, D.300 Ligands: SAL.3 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.10, B:H.171, B:D.300, B:D.300, H2O.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, X. et al., Structural Basis of Salicylic Acid Decarboxylase Reveals a Unique Substrate Recognition Mode and Access Channel. J.Agric.Food Chem. (2021)

Release Date

2020-04-01

Peptides

Salicylate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Salicylate decarboxylase

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