SMTL ID : 6jst.2 (1 other biounit)

Structure of Geobacillus kaustophilus lactonase, Y99P/D266N double mutant with bound 3-oxo-C8-HSL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.27, H.29, K.149, N.270 Ligands: ZN.2, OH.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.27, A:H.29, OH.3 FE.4: 5 residues within 4Å: Chain B: H.27, H.29, K.149, N.270 Ligands: ZN.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.27, B:H.29

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: K.149, H.182, H.210 Ligands: FE.1, OH.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.182, A:H.210, OH.3 ZN.5: 4 residues within 4Å: Chain B: K.149, H.182, H.210 Ligands: FE.4 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.182, B:H.210, H2O.8

1 x OH: HYDROXIDE ION(Non-covalent)

OH.3: 6 residues within 4Å: Chain A: H.29, K.149, H.210, N.270 Ligands: FE.1, ZN.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Go, M.K. et al., Directed Computational Evolution of Quorum-Quenching Lactonases from the Amidohydrolase Superfamily. Structure (2020)

Release Date

2020-04-08

Peptides

Phosphotriesterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Phosphotriesterase

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