- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- monomer
- Ligands
- 43 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x IMD: IMIDAZOLE(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.32: 19 residues within 4Å:- Chain A: V.341, F.343, T.394, G.395, Y.396, F.397, K.655, L.658, V.659, Q.674, P.682, A.684, D.685, E.724, N.728, S.892
- Ligands: MG.52, MG.53, MG.54
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:T.394, A:T.394, A:G.395, A:Y.396, A:Y.396, A:Q.674, A:A.684, A:N.728, A:S.892
- Water bridges: A:T.651, A:K.655, A:K.655, A:K.655, A:D.893, A:D.893, A:D.893
- Salt bridges: A:K.655
- 19 x SO4: SULFATE ION(Non-functional Binders)
SO4.33: 5 residues within 4Å:- Chain A: H.1092, R.1132, P.1133, Q.1134, T.1135
Ligand excluded by PLIPSO4.34: 5 residues within 4Å:- Chain A: P.1046, K.1047, N.1090, H.1092
- Ligands: EDO.12
Ligand excluded by PLIPSO4.35: 5 residues within 4Å:- Chain A: Q.1182, Q.1189, G.1190, M.1191, V.1192
Ligand excluded by PLIPSO4.36: 3 residues within 4Å:- Chain A: W.313, R.1165, R.1170
Ligand excluded by PLIPSO4.37: 3 residues within 4Å:- Chain A: G.1233, K.1234, V.1235
Ligand excluded by PLIPSO4.38: 7 residues within 4Å:- Chain A: R.65, E.1110, K.1114, R.1162
- Ligands: SO4.47, GOL.73, GOL.74
Ligand excluded by PLIPSO4.39: 6 residues within 4Å:- Chain A: T.303, H.304, N.305, H.306, S.784
- Ligands: EDO.14
Ligand excluded by PLIPSO4.40: 2 residues within 4Å:- Chain A: N.1119, R.1121
Ligand excluded by PLIPSO4.41: 3 residues within 4Å:- Chain A: T.638, I.639
- Ligands: EDO.13
Ligand excluded by PLIPSO4.42: 3 residues within 4Å:- Chain A: K.839, H.841, R.864
Ligand excluded by PLIPSO4.43: 5 residues within 4Å:- Chain A: S.20, A.21, F.22, N.1004, H.1167
Ligand excluded by PLIPSO4.44: 4 residues within 4Å:- Chain A: V.440, T.587, E.588, E.589
Ligand excluded by PLIPSO4.45: 4 residues within 4Å:- Chain A: T.1181, Q.1182, R.1227
- Ligands: GOL.69
Ligand excluded by PLIPSO4.46: 2 residues within 4Å:- Chain A: A.917, H.959
Ligand excluded by PLIPSO4.47: 4 residues within 4Å:- Chain A: R.1151, R.1162, R.1210
- Ligands: SO4.38
Ligand excluded by PLIPSO4.48: 2 residues within 4Å:- Chain A: H.76, T.77
Ligand excluded by PLIPSO4.49: 2 residues within 4Å:- Chain A: H.161, Q.162
Ligand excluded by PLIPSO4.50: 4 residues within 4Å:- Chain A: P.364, E.365, R.366, W.791
Ligand excluded by PLIPSO4.51: 4 residues within 4Å:- Chain A: Q.62, L.1117, F.1118, H.1120
Ligand excluded by PLIP- 3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.52: 4 residues within 4Å:- Chain A: D.685, N.728, D.890
- Ligands: ADP.32
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.685, A:D.890, H2O.10, H2O.23
MG.53: 2 residues within 4Å:- Chain A: E.724
- Ligands: ADP.32
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:E.724, H2O.5, H2O.6, H2O.9, H2O.15
MG.54: 1 residues within 4Å:- Ligands: ADP.32
No protein-ligand interaction detected (PLIP)- 28 x GOL: GLYCEROL(Non-functional Binders)
GOL.55: 4 residues within 4Å:- Chain A: V.1235, T.1236, E.1237
- Ligands: EDO.24
Ligand excluded by PLIPGOL.56: 8 residues within 4Å:- Chain A: E.654, T.656, W.679, Q.680, R.988, E.1011, K.1015, R.1174
Ligand excluded by PLIPGOL.57: 6 residues within 4Å:- Chain A: H.908, C.909, A.966, G.967, R.984, D.1018
Ligand excluded by PLIPGOL.58: 4 residues within 4Å:- Chain A: Q.773, D.865, V.866, A.867
Ligand excluded by PLIPGOL.59: 7 residues within 4Å:- Chain A: P.87, S.93, W.95, E.115, R.116
- Ligands: GOL.72, EDO.94
Ligand excluded by PLIPGOL.60: 5 residues within 4Å:- Chain A: E.272, S.274, A.275, P.294, H.296
Ligand excluded by PLIPGOL.61: 7 residues within 4Å:- Chain A: H.304, R.325, Q.477, G.510, A.511, E.552, Q.554
Ligand excluded by PLIPGOL.62: 6 residues within 4Å:- Chain A: A.715, R.719, D.761, K.764, A.765, E.769
Ligand excluded by PLIPGOL.63: 5 residues within 4Å:- Chain A: A.671, V.817, R.818, V.1274, H.1279
Ligand excluded by PLIPGOL.64: 4 residues within 4Å:- Chain A: D.258, K.738
- Ligands: EDO.7, GOL.66
Ligand excluded by PLIPGOL.65: 6 residues within 4Å:- Chain A: A.749, A.750, G.751, H.752, K.788, R.790
Ligand excluded by PLIPGOL.66: 4 residues within 4Å:- Chain A: D.258, Y.259
- Ligands: EDO.29, GOL.64
Ligand excluded by PLIPGOL.67: 3 residues within 4Å:- Chain A: G.919, D.920, D.921
Ligand excluded by PLIPGOL.68: 6 residues within 4Å:- Chain A: Q.355, P.356, W.357, K.644, R.645, H.648
Ligand excluded by PLIPGOL.69: 5 residues within 4Å:- Chain A: E.1219, R.1227, V.1235, N.1248
- Ligands: SO4.45
Ligand excluded by PLIPGOL.70: 7 residues within 4Å:- Chain A: F.230, F.246, I.249, G.781, K.782, D.783
- Ligands: EDO.25
Ligand excluded by PLIPGOL.71: 6 residues within 4Å:- Chain A: R.23, T.375, E.376, L.379, R.1002, R.1170
Ligand excluded by PLIPGOL.72: 7 residues within 4Å:- Chain A: P.87, S.93, P.94, E.145
- Ligands: GOL.59, GOL.76, EDO.94
Ligand excluded by PLIPGOL.73: 6 residues within 4Å:- Chain A: S.16, Q.68, Y.69, G.70, P.71
- Ligands: SO4.38
Ligand excluded by PLIPGOL.74: 8 residues within 4Å:- Chain A: R.65, S.1148, N.1149, L.1150, R.1151, E.1152, R.1162
- Ligands: SO4.38
Ligand excluded by PLIPGOL.75: 4 residues within 4Å:- Chain A: D.694, Y.696, R.1272, E.1285
Ligand excluded by PLIPGOL.76: 6 residues within 4Å:- Chain A: P.94, M.144, W.313, R.478, D.479
- Ligands: GOL.72
Ligand excluded by PLIPGOL.77: 4 residues within 4Å:- Chain A: Q.773, V.866, A.867, K.870
Ligand excluded by PLIPGOL.78: 8 residues within 4Å:- Chain A: H.283, G.286, R.575, I.1074, D.1075, D.1080, R.1085, I.1086
Ligand excluded by PLIPGOL.79: 6 residues within 4Å:- Chain A: V.622, Q.623, G.751, P.753, G.754, D.756
Ligand excluded by PLIPGOL.80: 2 residues within 4Å:- Chain A: F.290, D.694
Ligand excluded by PLIPGOL.81: 4 residues within 4Å:- Chain A: R.1123, E.1127, E.1152, L.1153
Ligand excluded by PLIPGOL.82: 5 residues within 4Å:- Chain A: L.1027, N.1032, N.1282, W.1283, G.1284
Ligand excluded by PLIP- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sharma, N. et al., Role of allosteric switches and adaptor domains in long-distance cross-talk and transient tunnel formation. Sci Adv (2020)
- Release Date
- 2020-03-04
- Peptides
- Phosphoribosylformylglycinamidine synthase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- monomer
- Ligands
- 43 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x IMD: IMIDAZOLE(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 19 x SO4: SULFATE ION(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 28 x GOL: GLYCEROL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sharma, N. et al., Role of allosteric switches and adaptor domains in long-distance cross-talk and transient tunnel formation. Sci Adv (2020)
- Release Date
- 2020-03-04
- Peptides
- Phosphoribosylformylglycinamidine synthase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A