SMTL ID : 6jtk.1 (2 other biounits)

Crystal structure of NagZ from Neisseria gonorrhoeae in complex with N-trifluoroacetyl-D-glucosamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x C76: 2,2,2-tris(fluoranyl)-N-[(2R,3R,4R,5S,6R)-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]ethanamide(Non-covalent)

C76.1: 14 residues within 4Å: Chain A: I.73, F.75, D.105, F.163, I.177, R.180, K.210, H.211, H.215, M.256, D.294 Chain B: D.221, S.222, H.223 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.180, A:R.180, A:K.210, A:H.211, A:D.294 Water bridges: A:R.113, A:K.210, A:K.210, A:D.295 Halogen bonds: A:D.294 C76.2: 11 residues within 4Å: Chain A: D.221 Chain B: I.73, F.75, D.105, E.107, V.176, I.177, R.180, K.210, H.211, H.215 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.113, B:R.180, B:R.180, B:K.210, B:H.211, A:D.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y., Crystal structure of NagZ from Neisseria gonorrhoeae in complex with N-trifluoroacetyl-D-glucosamine. To Be Published

Release Date

2020-05-13

Peptides

Beta-hexosaminidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Beta-hexosaminidase

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