SMTL ID : 6jtp.1

Crystal structure of HLA-C08 in complex with a tumor mut9m peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY- ALA- ASP- GLY- VAL- GLY- LYS- SER- ALA: 9-mer peptide(Non-covalent)

GLY-ALA-ASP-GLY-VAL-GLY-LYS-SER-ALA.1: 24 residues within 4Å: Chain A: Y.6, Y.8, E.62, K.65, Y.66, R.68, Q.69, T.72, V.75, S.76, N.79, L.80, Y.83, R.96, Y.98, T.142, K.145, W.146, A.149, E.151, R.155, Y.158, W.166, Y.170 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:Y.66, A:R.68, A:T.72, A:L.80, A:Y.98, A:A.149, A:Y.158 Hydrogen bonds: A:Y.6, A:E.62, A:S.76, A:N.79, A:Y.83, A:Y.98, A:Y.98, A:K.145, A:E.151, A:R.155, A:Y.170, A:Y.170 Water bridges: A:E.62, A:K.65, A:K.65, A:K.65, A:Q.69, A:R.96, A:K.145, A:E.151, A:R.155, A:R.155 Salt bridges: A:R.96, A:K.145, A:R.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bai, P. et al., Immune-based mutation classification enables neoantigen prioritization and immune feature discovery in cancer immunotherapy. Oncoimmunology (2021)

Release Date

2020-04-15

Peptides

HLA class I antigen, Cw8.2 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I antigen, Cw8.2 alpha chain

Beta-2-microglobulin

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