SMTL ID : 6jv7.1

Chimeric Rat C5a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.17, H.18, R.19 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.19 Water bridges: A:V.20 Salt bridges: A:H.18, A:R.19 SO4.2: 5 residues within 4Å: Chain A: I.46, G.47, P.48, H.49, C.50 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.46, A:H.49, A:C.50 Salt bridges: A:H.49 SO4.3: 3 residues within 4Å: Chain A: P.48 Chain B: H.18, R.19 No protein-ligand interaction detected (PLIP) SO4.4: 6 residues within 4Å: Chain A: R.52 Chain B: I.46, G.47, P.48, H.49, C.50 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.47 Salt bridges: A:R.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zuo, C., Chimeric protein probes for C5a receptors through fusion of anaphylatoxin C5a core region with a small-molecule antagonist. To Be Published

Release Date

2020-04-22

Peptides

Chimeric-rC5a: A
D-anaphylatoxin C5a: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chimeric-rC5a

D-anaphylatoxin C5a