SMTL ID : 6jwa.1

Crystal structure of CK2a1 with 5-iodotubercidin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x 5ID: (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL(Non-covalent)

5ID.1: 8 residues within 4Å: Chain A: L.50, V.58, V.71, I.100, E.119, H.120, V.121, M.168 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.71 Hydrogen bonds: A:L.50, A:E.119, A:V.121

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: N.98, E.144, R.174, K.175, L.176, R.177 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.176, A:L.176, A:R.177 EDO.3: 6 residues within 4Å: Chain A: Y.17, V.20, H.23, R.24, S.154 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.23, A:R.24, A:S.154 EDO.4: 3 residues within 4Å: Chain A: Y.151, S.154 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.154 EDO.5: 4 residues within 4Å: Chain A: D.261, Y.262, K.265, D.313 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.265, A:K.265, A:D.313 EDO.6: 4 residues within 4Å: Chain A: G.53, K.54, Y.55, S.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.54 EDO.7: 2 residues within 4Å: Chain A: H.173, K.175 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsuyuguchi, M. et al., A promiscuous kinase inhibitor delineates the conspicuous structural features of protein kinase CK2a1. Acta Crystallogr.,Sect.F (2019)

Release Date

2019-07-24

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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