SMTL ID : 6jwh.1

Yeast Npl4 zinc finger, MPN and CTD domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.30, H.32, C.38, C.41 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.30, A:H.32, A:C.38, A:C.41 ZN.2: 4 residues within 4Å: Chain A: C.97, H.101, C.109, C.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:H.101, A:C.109, A:C.112

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: Y.155, R.214, H.254, R.257, H.258 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.214, A:R.214, A:R.257, A:R.257, A:H.258 Water bridges: A:K.197 GOL.4: 3 residues within 4Å: Chain A: Q.121, D.353, Y.354 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.353 Water bridges: A:D.353 GOL.5: 8 residues within 4Å: Chain A: G.20, L.21, I.22, Y.51, D.164, N.165, T.166, P.167 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.20, A:Y.51, A:T.166 Water bridges: A:G.20, A:Y.51, A:L.168, A:L.168 GOL.6: 6 residues within 4Å: Chain A: E.131, K.162, Y.163, D.164, N.165, K.171 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.131, A:K.162, A:D.164 Water bridges: A:E.131, A:N.165 GOL.7: 8 residues within 4Å: Chain A: E.140, T.378, G.379, F.380, P.381, W.382, R.385, Q.390 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.379, A:W.382, A:R.385, A:R.385 GOL.8: 5 residues within 4Å: Chain A: A.16, H.63, L.66, K.67, N.70 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.63, A:K.67, A:K.67, A:N.70 GOL.9: 4 residues within 4Å: Chain A: F.153, L.189, F.219, E.247 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.247 Water bridges: A:L.189, A:L.189, A:S.244, A:S.244 GOL.10: 5 residues within 4Å: Chain A: F.242, Y.292, D.353, L.356, T.358 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.353 GOL.11: 3 residues within 4Å: Chain A: S.213, R.214, H.258 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.213, A:S.213, A:R.214, A:H.258 Water bridges: A:Y.160, A:R.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sato, Y. et al., Structural insights into ubiquitin recognition and Ufd1 interaction of Npl4. Nat Commun (2019)

Release Date

2019-12-25

Peptides

Nuclear protein localization protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear protein localization protein 4

Related Entries With Identical Sequence