- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x XTZ: 4-{[(2-amino-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}-N-(1,3-thiazol-2-yl)benzenesulfonamide(Non-covalent)
- 1 x PH2: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE(Non-covalent)
PH2.2: 13 residues within 4Å:- Chain A: T.57, V.58, P.59, E.60, Y.61, F.163, N.165, R.205, D.208, R.326, S.328
- Ligands: ATP.4, MG.9
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:V.58, A:E.60, A:N.165, A:N.165, A:S.328
- Water bridges: A:N.21, A:N.21, A:S.328
- pi-Stacking: A:F.163, A:F.163
- pi-Cation interactions: A:R.326
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 5 residues within 4Å:- Chain A: I.394, N.396, R.686, H.688
- Ligands: XTZ.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.396, A:R.686, A:R.686
GOL.11: 5 residues within 4Å:- Chain B: I.394, N.396, R.686, H.688
- Ligands: XTZ.10
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.396, B:R.686, B:R.686
- Water bridges: B:S.607
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.4: 19 residues within 4Å:- Chain A: L.181, K.185, R.205, D.208, D.210, I.211, N.312, I.313, E.314, F.315, L.316, S.317, I.318, H.320, Y.322, R.326
- Ligands: PH2.2, MG.5, MG.9
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:K.185, A:K.185, A:D.208, A:I.211, A:N.312, A:E.314, A:F.315, A:S.317, A:S.317
- Water bridges: A:Y.322, A:R.326
- Salt bridges: A:K.185, A:R.205, A:R.205, A:H.320, A:R.326
- pi-Stacking: A:H.320
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 3 residues within 4Å:- Chain A: D.208, D.210
- Ligands: ATP.4
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.208, A:D.208, A:D.210
MG.9: 4 residues within 4Å:- Chain A: D.208, D.210
- Ligands: PH2.2, ATP.4
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.208, H2O.4
MG.15: 2 residues within 4Å:- Chain B: D.208, D.210
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.208, B:D.208, B:D.210, H2O.10
- 2 x CA: CALCIUM ION(Non-covalent)
CA.6: 3 residues within 4Å:- Chain A: E.42, G.46, E.99
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.42, A:E.42, A:E.99, H2O.4, H2O.7
CA.12: 3 residues within 4Å:- Chain B: E.42, G.46, E.99
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.42, B:E.42, B:G.46, B:E.99
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 5 residues within 4Å:- Chain A: H.530, R.532, Y.544, D.550, Y.554
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.554
- Water bridges: A:R.532, A:D.550
- Salt bridges: A:H.530, A:R.532
ACT.8: 2 residues within 4Å:- Chain A: K.96, Y.97
No protein-ligand interaction detected (PLIP)ACT.13: 5 residues within 4Å:- Chain B: H.530, R.532, Y.544, D.550, Y.554
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.554
- Water bridges: B:R.532
- Salt bridges: B:H.530, B:R.532
ACT.14: 2 residues within 4Å:- Chain B: N.510, E.512
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.510
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chitnumsub, P. et al., The structure of Plasmodium falciparum hydroxymethyldihydropterin pyrophosphokinase-dihydropteroate synthase reveals the basis of sulfa resistance. Febs J. (2020)
- Release Date
- 2020-02-12
- Peptides
- 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase-dihydropteroate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x XTZ: 4-{[(2-amino-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}-N-(1,3-thiazol-2-yl)benzenesulfonamide(Non-covalent)
- 1 x PH2: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chitnumsub, P. et al., The structure of Plasmodium falciparum hydroxymethyldihydropterin pyrophosphokinase-dihydropteroate synthase reveals the basis of sulfa resistance. Febs J. (2020)
- Release Date
- 2020-02-12
- Peptides
- 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase-dihydropteroate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B