SMTL ID : 6jx3.1

Lasso peptide synthetase B1 complexed with the leader peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: E.22, D.36, G.95 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.22, A:D.36, A:D.36, H2O.3 ZN.2: 1 residues within 4Å: Chain A: D.58 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.58, A:D.58, H2O.3 ZN.3: 2 residues within 4Å: Chain A: H.60, D.64 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.64, H2O.3 ZN.4: 4 residues within 4Å: Chain A: D.79, R.82 Ligands: ZN.5, ZN.7 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.79, A:D.79, H2O.3, H2O.3 ZN.5: 4 residues within 4Å: Chain A: E.76, D.79 Ligands: ZN.4, ZN.7 No protein-ligand interaction detected (PLIP) ZN.6: 2 residues within 4Å: Chain A: E.72 Chain B: K.4 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.72, H2O.3 ZN.7: 3 residues within 4Å: Chain A: D.79 Ligands: ZN.4, ZN.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.79, A:D.79, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sumida, T. et al., Structural Basis of Leader Peptide Recognition in Lasso Peptide Biosynthesis Pathway. Acs Chem.Biol. (2019)

Release Date

2019-06-26

Peptides

TfuB1: A
TfuA-Leader: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

TfuB1

TfuA-Leader