SMTL ID : 6jx9.1

Structure of Y17107 complexed HPPD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CQC: 5-[(~{Z})-(1,3-dimethyl-5-oxidanylidene-pyrazol-4-ylidene)-oxidanyl-methyl]-2-(phenylmethyl)isoindole-1,3-dione(Non-covalent)

CQC.1: 13 residues within 4Å: Chain A: H.226, V.228, V.269, P.280, H.308, M.335, Q.379, F.381, E.394, F.419, G.420, F.424 Ligands: CO.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.381, A:F.381, A:F.424 Water bridges: A:S.267, A:S.267, A:Q.293, A:Q.379 pi-Stacking: A:F.424 CQC.3: 13 residues within 4Å: Chain B: H.226, V.228, V.269, P.280, H.308, M.335, Q.379, F.381, E.394, F.419, G.420, F.424 Ligands: CO.4 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.381, B:F.381, B:F.424 Water bridges: B:S.267, B:S.267, B:Q.293, B:Q.379 pi-Stacking: B:F.424

2 x CO: COBALT (II) ION(Non-covalent)

CO.2: 4 residues within 4Å: Chain A: H.226, H.308, E.394 Ligands: CQC.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.226, A:H.308, A:E.394, H2O.2 CO.4: 4 residues within 4Å: Chain B: H.226, H.308, E.394 Ligands: CQC.3 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.226, B:H.308, B:E.394, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, B. et al., Pyrazole-Isoindoline-1,3-dione Hybrid: A Promising Scaffold for 4-Hydroxyphenylpyruvate Dioxygenase Inhibitors. J.Agric.Food Chem. (2019)

Release Date

2020-03-11

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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