SMTL ID : 6jyp.1

Crystal structure of uPA_H99Y in complex with 3-azanyl-5-(azepan-1-yl)-N-[bis(azanyl)methylidene]-6-chloranyl-pyrazine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x HMX: 3-azanyl-5-(azepan-1-yl)-N-[bis(azanyl)methylidene]-6-chloranyl-pyrazine-2-carboxamide(Non-covalent)

HMX.1: 15 residues within 4Å: Chain A: H.46, Y.94, D.192, S.193, C.194, Q.195, S.198, V.216, S.217, W.218, G.219, G.221, C.222, G.229 Ligands: SO4.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.94 Hydrogen bonds: A:S.193, A:S.193, A:Q.195, A:S.198, A:G.221 Salt bridges: A:D.192

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: V.30, C.31, H.46, Q.195, G.196, D.197, S.198 Ligands: HMX.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.195, A:G.196, A:D.197, A:S.198, A:S.198 Water bridges: A:V.30, A:Y.150 Salt bridges: A:H.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buckley, B. et al., uPA-HMA. To Be Published

Release Date

2020-05-13

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
U

Urokinase-type plasminogen activator

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