SMTL ID : 6jz8.1

b-glucuronidase from Ruminococcus gnavus in complex with D-glucaro 1,5-lactone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

2 x GCB: (2S,3S,4S,5R)-3,4,5-trihydroxy-6-oxo-oxane-2-carboxylic acid(Non-covalent)

GCB.1: 13 residues within 4Å: Chain A: D.167, H.335, N.417, E.418, N.472, Y.474, Y.478, E.512, W.557, F.562, R.570, N.574, K.576 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.167, A:H.335, A:N.417, A:E.418, A:N.472, A:Y.478, A:N.574 Water bridges: A:D.167, A:E.418 Salt bridges: A:R.570, A:K.576 GCB.2: 13 residues within 4Å: Chain B: D.167, H.335, N.417, E.418, N.472, Y.474, Y.478, E.512, W.557, F.562, R.570, N.574, K.576 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:D.167, B:D.167, B:H.335, B:N.417, B:E.418, B:N.472, B:Y.478, B:W.557, B:N.574 Water bridges: B:D.167 Salt bridges: B:R.570, B:K.576

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dashnyam, P. et al., Substituent Position of Iminocyclitols Determines the Potency and Selectivity for Gut Microbial Xenobiotic-Reactivating Enzymes. J.Med.Chem. (2020)

Release Date

2020-06-10

Peptides

Beta-glucuronidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-glucuronidase

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