SMTL ID : 6jzc.1 (1 other biounit)

Structural basis of tubulin detyrosination

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: L.111, Q.112, Q.115, I.198, S.206, L.207, D.217, K.218, P.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.111, A:D.217, A:K.218 GOL.2: 7 residues within 4Å: Chain A: K.119, Y.123, S.210, R.211, R.212, A.213, M.216 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.211 Water bridges: A:Y.123 GOL.3: 9 residues within 4Å: Chain A: N.52, K.53, S.54, G.55, F.56, F.130, F.131, E.132, E.148 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.52, A:N.52, A:G.55, A:E.132 GOL.4: 5 residues within 4Å: Chain A: W.63, R.85, N.86 Chain B: R.56, E.60 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.60, A:R.85, A:R.85, A:N.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, C. et al., Structural basis of tubulin detyrosination by VASH2/SVBP heterodimer. Nat Commun (2019)

Release Date

2019-07-17

Peptides

Tubulinyl-Tyr carboxypeptidase 2: A
Small vasohibin-binding protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Tubulinyl-Tyr carboxypeptidase 2

Small vasohibin-binding protein

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