SMTL ID : 6jzh.1

Structure of human A2A adenosine receptor in complex with ZM241385 obtained from SFX experiments under atmospheric pressure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: L.73, D.77, S.116, F.363, N.401, S.402 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.116, A:S.116, A:N.401 Water bridges: A:S.402

1 x ZMA: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol(Non-covalent)

ZMA.2: 17 residues within 4Å: Chain A: V.109, L.110, L.192, F.193, E.194, M.199, M.202, N.206, W.367, L.370, H.371, N.374, H.385, L.388, M.391, Y.392, I.395 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.110, A:W.367, A:L.370, A:L.388 Hydrogen bonds: A:N.374, A:N.374 Water bridges: A:F.193, A:H.371, A:H.385, A:H.385 Salt bridges: A:E.194 pi-Stacking: A:F.193, A:F.193

19 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.3: 9 residues within 4Å: Chain A: L.39, P.86, I.89, T.90, T.93, F.95 Ligands: OLA.7, OLA.19, OLA.20 Ligand excluded by PLIP OLA.4: 10 residues within 4Å: Chain A: F.69, F.118, L.121, A.122, I.125, D.126, I.129, V.141, I.149, C.153 Ligand excluded by PLIP OLA.5: 5 residues within 4Å: Chain A: S.32, I.35, T.36, L.39 Ligands: OLA.19 Ligand excluded by PLIP OLA.6: 6 residues within 4Å: Chain A: S.384, P.387, W.389, L.390, L.393 Ligands: CLR.23 Ligand excluded by PLIP OLA.7: 2 residues within 4Å: Ligands: OLA.3, OLA.20 Ligand excluded by PLIP OLA.8: 3 residues within 4Å: Ligands: OLA.12, OLA.21, CLR.22 Ligand excluded by PLIP OLA.9: 5 residues within 4Å: Chain A: V.155, L.156, A.159, M.165, L.166 Ligand excluded by PLIP OLA.10: 12 residues within 4Å: Chain A: Y.68, V.71, S.72, A.75, A.79, F.108, L.112, K.147, I.150, W.154, F.158 Ligands: OLA.11 Ligand excluded by PLIP OLA.11: 11 residues within 4Å: Chain A: C.53, V.56, W.57, V.71, A.75, I.78, A.79, V.82, L.83 Ligands: OLA.10, OLA.18 Ligand excluded by PLIP OLA.12: 1 residues within 4Å: Ligands: OLA.8 Ligand excluded by PLIP OLA.13: 9 residues within 4Å: Chain A: V.37, I.41, L.44, T.400, V.403, V.404, F.407, Y.411 Ligands: OLA.14 Ligand excluded by PLIP OLA.14: 15 residues within 4Å: Chain A: G.30, S.31, V.33, Y.34, V.37, I.41, S.92, L.388, W.389, Y.392, L.393, V.396, T.400 Ligands: OLA.13, OLA.15 Ligand excluded by PLIP OLA.15: 3 residues within 4Å: Chain A: W.389, L.393 Ligands: OLA.14 Ligand excluded by PLIP OLA.16: 7 residues within 4Å: Chain A: L.44, L.47, G.48, L.51, V.403, F.407, I.424 Ligand excluded by PLIP OLA.17: 2 residues within 4Å: Chain A: W.57 Ligands: OLA.18 Ligand excluded by PLIP OLA.18: 8 residues within 4Å: Chain A: V.50, C.53, W.54, W.57, L.58, I.78 Ligands: OLA.11, OLA.17 Ligand excluded by PLIP OLA.19: 9 residues within 4Å: Chain A: P.27, I.28, S.31, I.35, L.39, I.89, T.93 Ligands: OLA.3, OLA.5 Ligand excluded by PLIP OLA.20: 11 residues within 4Å: Chain A: V.82, L.83, P.86, F.87, T.90, F.95, C.96, I.105 Ligands: OLA.3, OLA.7, CLR.22 Ligand excluded by PLIP OLA.21: 7 residues within 4Å: Chain A: A.98, H.100, G.101, F.104, M.165 Ligands: OLA.8, CLR.22 Ligand excluded by PLIP

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.22: 12 residues within 4Å: Chain A: L.83, F.87, F.95, A.97, A.98, G.101, C.102, F.104, I.105 Ligands: OLA.8, OLA.20, OLA.21 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.97, A:I.105 Hydrogen bonds: A:A.98 CLR.23: 13 residues within 4Å: Chain A: L.365, L.368, P.369, I.372, I.373, F.376, C.383, S.384, H.385, A.386, P.387, L.390 Ligands: OLA.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.369, A:I.373, A:F.376, A:A.386 CLR.24: 10 residues within 4Å: Chain A: F.207, F.208, L.212, L.216, L.368, I.372, C.375, F.376, F.379, C.380 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.212, A:F.376, A:F.376, A:F.376, A:F.379

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimazu, Y. et al., High-viscosity sample-injection device for serial femtosecond crystallography at atmospheric pressure. J.Appl.Crystallogr. (2019)

Release Date

2019-10-30

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a