SMTL ID : 6jzm.1

The intermediate forming O-C10 bond formation in AsqJ-catalyzed epoxidation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.134, D.136, H.211 Ligands: SIN.2, CQ9.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.134, A:D.136, A:H.211

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.2: 10 residues within 4Å: Chain A: M.122, Q.131, L.159, T.172, C.212, G.213, R.223, L.225 Ligands: FE.1, CQ9.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.131 Salt bridges: A:H.134, A:R.223

1 x CQ9: (3~{R},3'~{S})-4-methyl-3'-phenyl-spiro[1~{H}-1,4-benzodiazepine-3,2'-oxirane]-2,5-dione(Non-covalent)

CQ9.3: 18 residues within 4Å: Chain A: N.70, V.72, L.73, L.79, M.118, M.122, Q.131, P.132, H.134, R.135, D.136, M.137, F.139, N.157, T.227, T.229 Ligands: FE.1, SIN.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.72, A:L.79, A:Q.131, A:P.132, A:H.134, A:F.139, A:T.227 Hydrogen bonds: A:N.70, A:M.137 Water bridges: A:R.138, A:F.139, A:S.140 pi-Stacking: A:H.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liao, H.J. et al., The intermediate forming O-C10 bond formation in AsqJ-catalyzed epoxidation. J.Am.Chem.Soc. (2020)

Release Date

2020-03-18

Peptides

Iron/alpha-ketoglutarate-dependent dioxygenase asqJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Iron/alpha-ketoglutarate-dependent dioxygenase asqJ

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