SMTL ID : 6k04.1

Crystal structure of BRD2(BD2)with ligand BY27 bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x CQF: (6~{R})-~{N}-(4-chlorophenyl)-1-methyl-8-(1-methylpyrazol-4-yl)-5,6-dihydro-4~{H}-[1,2,4]triazolo[4,3-a][1]benzazepin-6-amine(Non-covalent)

CQF.1: 13 residues within 4Å: Chain A: W.27, P.28, F.29, V.33, L.38, L.40, C.82, Y.85, N.86, H.90, D.91, V.92, M.95 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.27, A:P.28, A:P.28, A:F.29, A:V.33, A:L.38, A:L.40, A:V.92, A:V.92 Hydrogen bonds: A:N.86 Water bridges: A:Y.43, A:H.90 pi-Stacking: A:W.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, D. et al., Discovery, structural insight, and bioactivities of BY27 as a selective inhibitor of the second bromodomains of BET proteins. Eur.J.Med.Chem. (2019)

Release Date

2019-09-18

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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