SMTL ID : 6k0e.1

The quinary complex of AsqJ-Fe-2OG-dehydrocyclopeptin-dioxygen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.153, D.155, H.230 Ligands: AKG.2, PEO.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.153, A:D.155, A:H.230

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 15 residues within 4Å: Chain A: L.92, M.141, Q.150, H.153, D.155, L.178, T.191, H.230, C.231, G.232, R.242, L.244 Ligands: FE.1, CO0.3, PEO.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.178 Hydrogen bonds: A:Q.150 Salt bridges: A:H.153, A:R.242

1 x CO0: (3~{Z})-4-methyl-3-(phenylmethylidene)-1~{H}-1,4-benzodiazepine-2,5-dione(Non-covalent)

CO0.3: 19 residues within 4Å: Chain A: N.89, V.91, L.92, L.98, M.137, M.141, Q.150, P.151, H.153, R.154, D.155, M.156, F.158, N.176, T.246, T.248, L.257 Ligands: AKG.2, PEO.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.91, A:L.92, A:L.98, A:H.153, A:F.158, A:T.246 Hydrogen bonds: A:N.89, A:M.156 Water bridges: A:R.157, A:F.158, A:S.159 pi-Stacking: A:H.153

1 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)

PEO.4: 8 residues within 4Å: Chain A: D.155, N.176, L.178, H.230, T.246 Ligands: FE.1, AKG.2, CO0.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liao, H.J. et al., The quinary complex of AsqJ-Fe-2OG-dehydrocyclopeptin-dioxygen. J.Am.Chem.Soc. (2020)

Release Date

2020-03-18

Peptides

Iron/alpha-ketoglutarate-dependent dioxygenase asqJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Iron/alpha-ketoglutarate-dependent dioxygenase asqJ

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