- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
UPG.2: 21 residues within 4Å:- Chain A: K.85, V.87, S.125, A.126, Y.150, Y.178, F.179, N.180, A.199, N.200, L.201, Q.217, V.218, Y.219, G.230, R.232, Y.234, V.269, R.292, D.295
- Ligands: NAD.1
27 PLIP interactions:27 interactions with chain A- Hydrophobic interactions: A:L.201, A:Y.219
- Hydrogen bonds: A:K.85, A:Y.150, A:Y.150, A:N.180, A:N.200, A:N.200, A:L.201, A:Q.217, A:Y.219, A:Y.219, A:D.295
- Water bridges: A:N.180, A:T.202, A:Q.217, A:G.230, A:R.232, A:R.232, A:R.292, A:R.292, A:R.292, A:R.292, A:R.292
- Salt bridges: A:R.232, A:R.292, A:R.292
UPG.4: 21 residues within 4Å:- Chain B: K.85, V.87, S.125, A.126, Y.150, Y.178, F.179, N.180, A.199, N.200, L.201, Q.217, V.218, Y.219, G.230, R.232, Y.234, V.269, R.292, D.295
- Ligands: NAD.3
29 PLIP interactions:29 interactions with chain B- Hydrophobic interactions: B:L.201, B:Y.219
- Hydrogen bonds: B:K.85, B:Y.150, B:N.180, B:N.200, B:N.200, B:L.201, B:Q.217, B:Y.219, B:Y.219, B:Y.219, B:Y.234, B:D.295
- Water bridges: B:N.180, B:T.202, B:Q.217, B:G.230, B:R.232, B:R.292, B:R.292, B:R.292, B:R.292, B:R.292, B:D.295, B:D.295
- Salt bridges: B:R.232, B:R.292, B:R.292
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nam, Y.W. et al., Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum. Sci Rep (2019)
- Release Date
- 2019-08-07
- Peptides
- UDP-glucose 4-epimerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nam, Y.W. et al., Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum. Sci Rep (2019)
- Release Date
- 2019-08-07
- Peptides
- UDP-glucose 4-epimerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A