SMTL ID : 6k0w.2 (1 other biounit)

DNA methyltransferase in complex with sinefungin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 15 residues within 4Å: Chain A: G.101, D.102, N.103, D.124, F.397, P.400, K.401, F.425, F.426, A.427, G.428, S.429, T.431, Q.453, I.454 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:D.102, A:D.102, A:N.103, A:D.124, A:D.124, A:K.401, A:F.426, A:G.428, A:S.429, A:T.431, A:Q.453, A:I.454 Water bridges: A:T.432, A:T.432, A:T.432 pi-Stacking: A:F.426, A:F.426 SFG.2: 17 residues within 4Å: Chain B: G.101, D.102, N.103, D.124, F.186, R.190, F.397, P.400, K.401, F.425, F.426, A.427, G.428, S.429, T.431, Q.453, I.454 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:D.102, B:N.103, B:N.103, B:D.124, B:R.190, B:K.401, B:F.426, B:G.428, B:S.429, B:T.431, B:Q.453, B:I.454 Water bridges: B:T.432, B:T.432, B:T.432 pi-Stacking: B:F.426, B:F.426

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Narayanan, N. et al., Tetramerization at Low pH Licenses DNA Methylation Activity of M.HpyAXI in the Presence of Acid Stress. J.Mol.Biol. (2020)

Release Date

2019-12-11

Peptides

Adenine specific DNA methyltransferase (Mod): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Adenine specific DNA methyltransferase (Mod)

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