SMTL ID : 6k0y.1

Study of the interactions of a novel monoclonal antibody, mAb059c, with the hPD-1 receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: F.172, P.173, A.174, V.175, S.183, L.184, S.185 Chain B: S.162, S.176 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:V.175, A:S.183, B:S.162, B:S.176 EDO.2: 5 residues within 4Å: Chain A: V.2, H.27, Y.33, W.35, R.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.98 Water bridges: A:H.27, A:S.28, A:Y.33 EDO.3: 4 residues within 4Å: Chain B: L.54, S.60, F.62, S.63 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.60 Water bridges: B:S.52, B:S.52, B:L.54, B:G.64 EDO.4: 4 residues within 4Å: Chain C: T.35, S.36, E.37, F.39 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.35, C:E.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Study of the interactions of a novel monoclonal antibody, mAb059c, with the hPD-1 receptor. Sci Rep (2019)

Release Date

2019-12-11

Peptides

Antibody Heavy Chain: A
Antibody Light Chain: B
Programmed cell death protein 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Antibody Heavy Chain

Antibody Light Chain

Programmed cell death protein 1