SMTL ID : 6k0z.1

Substrate bound state of Staphylococcus Aureus AldH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: H.365, K.369, E.389, L.390, S.391 Chain B: F.22, K.28 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.391, A:S.391, B:K.28, B:K.28 GOL.5: 7 residues within 4Å: Chain A: F.22, K.28 Chain B: H.365, K.369, E.389, L.390, S.391 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:H.365, B:S.391, B:S.391, A:K.28, A:K.28

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.367, P.368, K.369, G.415, A.416 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.369, A:A.416 EDO.3: 5 residues within 4Å: Chain A: Y.112, T.432, H.433, E.434 Chain B: R.421 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.112, A:E.434 EDO.4: 4 residues within 4Å: Chain A: K.454, G.455, K.456, F.457 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.455, A:F.457 EDO.6: 5 residues within 4Å: Chain B: R.367, P.368, K.369, G.415, A.416 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.369, B:A.416 EDO.7: 5 residues within 4Å: Chain A: R.421 Chain B: Y.112, T.432, H.433, E.434 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.433, B:E.434 EDO.8: 4 residues within 4Å: Chain B: K.454, G.455, K.456, F.457 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.455, B:F.457

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tao, X. et al., Structural Insight into the Substrate Gating Mechanism by Staphylococcus aureus Aldehyde Dehydrogenase. CCS Chemistry (2020)

Release Date

2020-05-20

Peptides

Aldehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aldehyde dehydrogenase

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