SMTL ID : 6k1c.1

Crystal structure of EXD2 exonuclease domain soaked in Mg and dGMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: D.33 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.33, H2O.1, H2O.2, H2O.2, H2O.3 MG.2: 3 residues within 4Å: Chain B: D.33, C.34, D.96 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:D.33, H2O.4, H2O.4, H2O.4, H2O.5, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J. et al., The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination. Nucleic Acids Res. (2019)

Release Date

2019-05-22

Peptides

Exonuclease 3'-5' domain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Exonuclease 3'-5' domain-containing protein 2

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