- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x DPO: DIPHOSPHATE(Non-covalent)
- 18 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 6 residues within 4Å:- Chain A: D.69, D.74, D.106, K.108
- Ligands: DPO.1, MG.4
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.69, A:D.74, A:D.74
MG.3: 5 residues within 4Å:- Chain A: D.101, D.106, K.108, K.146
- Ligands: DPO.1
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.101, A:D.106
MG.4: 4 residues within 4Å:- Chain A: Y.59, D.74
- Ligands: DPO.1, MG.2
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:Y.59, A:D.74
MG.6: 6 residues within 4Å:- Chain B: D.101, D.106, K.108, Y.145, K.146
- Ligands: DPO.5
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:D.101, B:D.106
MG.7: 6 residues within 4Å:- Chain B: D.69, D.74, D.106, K.108
- Ligands: DPO.5, MG.8
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.69, B:D.74, B:D.74
MG.8: 4 residues within 4Å:- Chain B: Y.59, D.74
- Ligands: DPO.5, MG.7
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:Y.59, B:D.74
MG.10: 6 residues within 4Å:- Chain C: D.69, D.74, D.106, K.108
- Ligands: DPO.9, MG.12
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:D.69, C:D.74, C:D.74
MG.11: 5 residues within 4Å:- Chain C: D.101, D.106, K.108, K.146
- Ligands: DPO.9
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.101, C:D.106
MG.12: 4 residues within 4Å:- Chain C: Y.59, D.74
- Ligands: DPO.9, MG.10
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:Y.59, C:D.74
MG.14: 6 residues within 4Å:- Chain D: D.101, D.106, K.108, Y.145, K.146
- Ligands: DPO.13
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.101, D:D.106
MG.15: 6 residues within 4Å:- Chain D: D.69, D.74, D.106, K.108
- Ligands: DPO.13, MG.16
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:D.69, D:D.74, D:D.74
MG.16: 4 residues within 4Å:- Chain D: Y.59, D.74
- Ligands: DPO.13, MG.15
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:Y.59, D:D.74
MG.18: 6 residues within 4Å:- Chain E: D.69, D.74, D.106, K.108
- Ligands: DPO.17, MG.20
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:D.69, E:D.74, E:D.74
MG.19: 5 residues within 4Å:- Chain E: D.101, D.106, K.108, K.146
- Ligands: DPO.17
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:D.101, E:D.106
MG.20: 4 residues within 4Å:- Chain E: Y.59, D.74
- Ligands: DPO.17, MG.18
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:Y.59, E:D.74
MG.22: 6 residues within 4Å:- Chain F: D.101, D.106, K.108, Y.145, K.146
- Ligands: DPO.21
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:D.101, F:D.106
MG.23: 6 residues within 4Å:- Chain F: D.69, D.74, D.106, K.108
- Ligands: DPO.21, MG.24
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:D.69, F:D.74, F:D.74
MG.24: 4 residues within 4Å:- Chain F: Y.59, D.74
- Ligands: DPO.21, MG.23
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:Y.59, F:D.74
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Si, Y. et al., Crystal Structures of Pyrophosphatase from Acinetobacter baumannii: Snapshots of Pyrophosphate Binding and Identification of a Phosphorylated Enzyme Intermediate. Int J Mol Sci (2019)
- Release Date
- 2019-10-02
- Peptides
- Inorganic pyrophosphatase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
GC
CD
GE
CF
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x DPO: DIPHOSPHATE(Non-covalent)
- 18 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Si, Y. et al., Crystal Structures of Pyrophosphatase from Acinetobacter baumannii: Snapshots of Pyrophosphate Binding and Identification of a Phosphorylated Enzyme Intermediate. Int J Mol Sci (2019)
- Release Date
- 2019-10-02
- Peptides
- Inorganic pyrophosphatase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
GC
CD
GE
CF
G