SMTL ID : 6k2n.1

Structural basis of glycan recognition in globally predominant human P[8] rotavirus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

2 x A2G- GAL- NAG: beta-D-galactopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose

A2G-GAL-NAG.1: 8 residues within 4Å: Chain B: L.104, Y.106, G.107, R.109, W.111, T.122, R.146, E.149 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.107, B:R.109, B:T.122, B:R.146, B:R.146 Salt bridges: B:R.109 Water bridges: B:G.107, B:G.108, B:T.122, B:T.122, B:E.149, B:E.149 A2G-GAL-NAG.2: 7 residues within 4Å: Chain D: L.104, Y.106, G.107, W.111, T.122, R.146, E.149 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.107, D:R.146 Water bridges: D:G.107, D:T.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, X. et al., Structural Basis of Glycan Recognition in Globally Predominant Human P[8] Rotavirus. Virol Sin (2020)

Release Date

2019-10-09

Peptides

Outer capsid protein VP4: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Outer capsid protein VP4

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