SMTL ID : 6k2u.1

Crystal structure of Thr66 ADP-ribosylated ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Covalent)

APR.1: 5 residues within 4Å: Chain A: F.5, K.7, E.65, S.66, T.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.65 Salt bridges: A:K.7, A:K.7

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: E.25, D.53 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.25, A:E.25, A:D.53, H2O.1, H2O.1

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: E.19 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.19, A:E.19, H2O.1, H2O.1 MG.4: 3 residues within 4Å: Chain A: E.19, D.22, K.30 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, F. et al., Threonine ADP-Ribosylation of Ubiquitin by a Bacterial Effector Family Blocks Host Ubiquitination. Mol.Cell (2020)

Release Date

2020-03-18

Peptides

Polyubiquitin-C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Polyubiquitin-C

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