SMTL ID : 6k3g.1

Crystal structure of 10-Hydroxygeraniol Dehydrogenase from Cantharanthus roseus in complex with NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 31 residues within 4Å: Chain A: C.50, H.51, S.52, H.55, W.61, C.166, T.170, G.191, L.192, G.193, G.194, L.195, S.214, T.215, S.216, K.219, T.254, V.255, S.256, A.257, I.258, V.277, G.278, A.279, S.301, A.302, I.303, L.340, R.348 Chain B: I.292 Ligands: ZN.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:T.170, A:L.195, A:I.303 Hydrogen bonds: A:H.51, A:H.55, A:L.192, A:G.194, A:L.195, A:T.215, A:S.216, A:S.256, A:V.277, A:A.279, A:I.303, A:L.340 Water bridges: A:G.193, A:G.193, A:R.348 Salt bridges: A:H.51, A:K.219, A:R.348 NAP.4: 31 residues within 4Å: Chain A: I.292 Chain B: C.50, H.51, S.52, H.55, W.61, C.166, T.170, G.191, L.192, G.193, G.194, L.195, S.214, T.215, S.216, K.219, T.254, V.255, S.256, A.257, I.258, V.277, G.278, A.279, S.301, A.302, I.303, L.340, R.348 Ligands: ZN.5 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:T.170, B:L.195, B:I.303 Hydrogen bonds: B:H.51, B:H.55, B:L.192, B:G.194, B:L.195, B:T.215, B:T.215, B:S.216, B:S.256, B:V.277, B:A.279, B:I.303, B:L.340 Water bridges: B:G.193, B:G.193, B:R.348 Salt bridges: B:H.51, B:K.219, B:R.348

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: C.50, S.52, H.72, C.98, C.166 Ligands: NAP.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.50, A:H.72, A:C.166, H2O.1 ZN.3: 5 residues within 4Å: Chain A: C.103, R.104, C.106, C.109, C.117 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.103, A:C.106, A:C.109, A:C.117 ZN.5: 6 residues within 4Å: Chain B: C.50, S.52, H.72, C.98, C.166 Ligands: NAP.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.50, B:H.72, B:C.166, H2O.2 ZN.6: 5 residues within 4Å: Chain B: C.103, R.104, C.106, C.109, C.117 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.103, B:C.106, B:C.109, B:C.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sandholu, A.S. et al., Structural studies on 10-hydroxygeraniol dehydrogenase: A novel linear substrate-specific dehydrogenase from Catharanthus roseus. Proteins (2020)

Release Date

2020-03-25

Peptides

10-hydroxygeraniol oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

10-hydroxygeraniol oxidoreductase