- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-24-mer
- Ligands
- 24 x FE2: FE (II) ION(Non-covalent)
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)
HEM.2: 11 residues within 4Å:- Chain A: L.19, N.23, F.26, M.52, E.56
- Chain B: L.19, N.23, F.26, M.52, E.56, Y.71
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B,- Hydrophobic interactions: A:F.26, B:F.26
- pi-Stacking: A:F.49
- Hydrogen bonds: B:Y.71
HEM.5: 9 residues within 4Å:- Chain C: F.26, F.49, M.52, R.53, H.54, E.56
- Chain D: F.26, M.52, E.56
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain D,- Hydrophobic interactions: C:F.26, C:F.26, C:E.56, D:F.26
- Hydrogen bonds: C:E.56
HEM.8: 12 residues within 4Å:- Chain E: L.19, N.23, F.26, R.45, F.49, M.52, Y.71
- Chain F: L.19, F.26, M.52, E.56, Y.71
8 PLIP interactions:5 interactions with chain E, 3 interactions with chain F,- Hydrophobic interactions: E:L.19, E:F.26, E:F.49, E:Y.71, F:L.19, F:F.26, F:Y.71
- Salt bridges: E:R.45
HEM.14: 10 residues within 4Å:- Chain J: L.19, F.26, M.52, E.56
- Chain K: N.23, F.26, F.49, M.52, R.53, E.56
5 PLIP interactions:4 interactions with chain K, 1 interactions with chain J,- Hydrophobic interactions: K:F.26, K:F.49, K:R.53, K:E.56, J:F.26
HEM.17: 8 residues within 4Å:- Chain L: F.26, M.52, R.53, E.56, Y.71
- Chain M: F.26, M.52, E.56
5 PLIP interactions:3 interactions with chain L, 2 interactions with chain M,- Hydrophobic interactions: L:F.26, M:F.26, M:F.26
- Hydrogen bonds: L:Y.71
- Salt bridges: L:R.53
HEM.19: 10 residues within 4Å:- Chain H: N.23, F.26, M.52, R.53, A.55, E.56, V.57
- Chain N: F.26, R.45, M.52
5 PLIP interactions:3 interactions with chain H, 2 interactions with chain N,- Hydrophobic interactions: H:F.26, H:R.53, H:E.56, N:F.26
- Hydrogen bonds: N:R.45
HEM.22: 12 residues within 4Å:- Chain O: L.19, N.23, F.26, F.49, M.52, Y.71
- Chain P: L.19, N.23, F.26, M.52, E.56, Y.71
9 PLIP interactions:4 interactions with chain P, 5 interactions with chain O,- Hydrophobic interactions: P:L.19, P:F.26, P:M.52, O:L.19, O:F.26, O:F.49, O:F.49, O:M.52
- Hydrogen bonds: P:N.23
HEM.25: 10 residues within 4Å:- Chain Q: F.26, M.52, E.56, Y.71
- Chain R: L.19, F.26, K.30, R.45, M.52, E.56
4 PLIP interactions:3 interactions with chain R, 1 interactions with chain Q,- Hydrophobic interactions: R:L.19, R:F.26, Q:F.26
- Salt bridges: R:R.45
HEM.28: 11 residues within 4Å:- Chain I: L.19, F.26, M.52, E.56, Y.71
- Chain S: N.23, F.26, R.45, F.49, M.52, Y.71
10 PLIP interactions:4 interactions with chain I, 6 interactions with chain S,- Hydrophobic interactions: I:L.19, I:F.26, I:E.56, I:Y.71, S:F.26, S:F.49, S:F.49, S:Y.71
- Salt bridges: S:R.45, S:R.45
HEM.30: 9 residues within 4Å:- Chain T: L.19, N.23, F.26, M.52, Y.71
- Chain U: N.23, F.26, M.52, E.56
6 PLIP interactions:3 interactions with chain T, 3 interactions with chain U,- Hydrophobic interactions: T:L.19, T:F.26, U:F.26, U:F.26, U:E.56
- Hydrogen bonds: T:N.23
HEM.33: 12 residues within 4Å:- Chain V: N.23, F.26, M.52, E.56, Y.71
- Chain W: L.19, N.23, F.26, K.30, R.45, M.52, E.56
6 PLIP interactions:3 interactions with chain W, 3 interactions with chain V,- Hydrophobic interactions: W:L.19, W:F.26, V:F.26, V:M.52
- Salt bridges: W:R.45
- Hydrogen bonds: V:Y.71
HEM.35: 8 residues within 4Å:- Chain G: L.19, F.26, F.49, M.52
- Chain X: N.23, F.26, M.52, Y.71
8 PLIP interactions:6 interactions with chain G, 2 interactions with chain X,- Hydrophobic interactions: G:L.19, G:F.26, G:F.26, G:F.49, X:F.26, X:Y.71
- pi-Stacking: G:F.26, G:F.26
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jobichen, C. et al., Cryo-EM structure of Apo-bacterioferritin from Streptomyces coelicolor. To Be Published
- Release Date
- 2021-02-03
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
FF
EG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
X
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-24-mer
- Ligands
- 24 x FE2: FE (II) ION(Non-covalent)
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jobichen, C. et al., Cryo-EM structure of Apo-bacterioferritin from Streptomyces coelicolor. To Be Published
- Release Date
- 2021-02-03
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
FF
EG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
X