SMTL ID : 6k4c.1

Ancestral luciferase AncLamp in complex with DLSA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x SLU: 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE(Non-covalent)

SLU.1: 23 residues within 4Å: Chain A: S.197, H.244, F.246, T.250, G.314, G.315, A.316, P.317, R.336, Q.337, G.338, Y.339, G.340, L.341, T.342, S.346, A.347, T.361, D.421, I.433, R.436, K.528 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.246, A:T.250, A:A.347 Hydrogen bonds: A:G.315, A:G.338, A:T.342, A:T.342, A:A.347, A:T.361, A:D.421, A:R.436, A:K.528 Water bridges: A:G.199, A:L.318 Salt bridges: A:H.244, A:K.528 pi-Stacking: A:Y.339, A:Y.339

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.197, S.198, T.342 Ligands: SLU.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.197, H2O.4, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oba, Y. et al., Resurrecting the ancient glow of the fireflies. Sci Adv (2020)

Release Date

2020-05-27

Peptides

Ancestral luciferase AncLamp: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ancestral luciferase AncLamp

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