SMTL ID : 6k4j.1

Crystal Structure of the the CD9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x PLM: PALMITIC ACID(Covalent)

PLM.1: 3 residues within 4Å: Chain A: M.215, C.219, R.223 No protein-ligand interaction detected (PLIP)

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 3 residues within 4Å: Chain A: R.41, Y.62, Y.66 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.66, A:Y.66 Hydrogen bonds: A:R.41 Salt bridges: A:R.41

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: E.179, E.187 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.179, A:E.179, A:E.187, A:E.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Umeda, R. et al., Structural insights into tetraspanin CD9 function. Nat Commun (2020)

Release Date

2020-05-13

Peptides

CD9 antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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CD9 antigen