SMTL ID : 6k5j.1

Structure of a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 18 residues within 4Å: Chain A: I.47, F.49, D.83, R.91, F.134, V.148, R.152, K.182, H.183, H.187, S.194, H.195, M.228, D.268, C.269, M.272, L.297 Ligands: GOL.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.148 Hydrogen bonds: A:R.91, A:R.152, A:R.152, A:K.182, A:H.183, A:D.268 Water bridges: A:S.299, A:S.299 Salt bridges: A:H.195

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: D.83, R.91, R.152, H.195, E.402, V.403 Ligands: NAG.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.402 Water bridges: A:E.402, A:E.402, A:E.402

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Itoh, T. et al., Structural and functional characterization of a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7. J.Biochem. (2019)

Release Date

2019-09-25

Peptides

GH3 beta-N-acetylglucosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GH3 beta-N-acetylglucosaminidase