SMTL ID : 6k76.1

Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 15 residues within 4Å: Chain A: G.11, T.12, T.13, G.260, T.261, G.303, A.304, V.306, Q.307, A.319, G.401, G.402, A.403, A.405, N.406 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.12, A:T.13, A:T.13, A:G.260, A:T.261, A:Q.307, A:Q.307, A:G.402, A:A.403, A:N.406 ANP.2: 12 residues within 4Å: Chain B: T.13, Y.259, G.260, T.261, G.303, A.304, V.306, Q.307, A.319, G.402, A.403, N.406 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.13, B:T.13, B:T.261, B:T.261, B:Q.307, B:Q.307, B:G.402, B:A.403, B:N.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hokao, R. et al., Structural analysis of hexameric structure of glycerol kinase from Thermococcus kodakaraeinsis KOD1. To Be Published

Release Date

2020-06-10

Peptides

Glycerol kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycerol kinase

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