- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.60 Å
- Oligo State
- hetero-8-8-2-2-mer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 8 x CDL: CARDIOLIPIN(Non-covalent)
CDL.2: 18 residues within 4Å:- Chain A: V.163, Y.170, T.173, A.205, Y.209, M.212, T.213, R.225, Q.226, L.229, F.230
- Chain C: F.175
- Chain F: K.15, L.20, F.24
- Chain G: F.30
- Ligands: PLX.3, PLX.11
12 PLIP interactions:7 interactions with chain A, 2 interactions with chain G, 2 interactions with chain F, 1 interactions with chain C- Hydrophobic interactions: A:V.163, A:Y.170, A:A.205, G:F.30, G:F.30, F:F.24, C:F.175
- Hydrogen bonds: A:Q.226, A:Q.226
- Salt bridges: A:R.225, A:K.233, F:K.15
CDL.5: 14 residues within 4Å:- Chain B: R.159, Y.209, M.212, T.213, R.225, Q.226, L.229, F.230, K.233
- Chain G: K.15, L.20, F.24
- Ligands: PLX.4, PLX.6
6 PLIP interactions:2 interactions with chain G, 4 interactions with chain B- Hydrophobic interactions: G:L.20, G:F.24
- Hydrogen bonds: B:Q.226
- Salt bridges: B:R.225, B:K.233, B:K.233
CDL.8: 17 residues within 4Å:- Chain C: M.204, A.205, Y.209, M.212, T.213, R.225, Q.226, L.229, F.230
- Chain D: F.175
- Chain E: F.18, L.20, F.24, L.31
- Chain F: I.37
- Ligands: PLX.9, PLX.10
14 PLIP interactions:4 interactions with chain C, 7 interactions with chain E, 1 interactions with chain F, 2 interactions with chain D- Hydrophobic interactions: C:A.205, E:F.18, E:L.20, E:L.20, E:L.20, E:F.24, E:L.31, F:I.37, D:F.175, D:F.175
- Hydrogen bonds: C:Q.226, C:Q.226
- Salt bridges: C:R.225, E:K.15
CDL.13: 17 residues within 4Å:- Chain B: F.175
- Chain D: Y.170, I.198, Y.209, M.212, T.213, R.225, L.229, F.230, K.233
- Chain H: K.15, F.18, L.20, V.23, F.24, V.27
- Ligands: PLX.12
10 PLIP interactions:6 interactions with chain H, 4 interactions with chain D- Hydrophobic interactions: H:F.18, H:L.20, H:V.23, H:F.24, H:V.27, D:I.198, D:K.233
- Salt bridges: H:K.15, D:R.225, D:K.233
CDL.15: 18 residues within 4Å:- Chain K: V.163, G.166, T.173, M.204, A.205, Y.209, M.212, T.213, R.225, Q.226, L.229
- Chain M: F.175
- Chain P: K.15, F.18, L.20, F.24, L.31
- Ligands: PLX.16
10 PLIP interactions:5 interactions with chain P, 4 interactions with chain K, 1 interactions with chain M- Hydrophobic interactions: P:F.18, P:L.20, P:F.24, P:L.31, K:V.163, M:F.175
- Salt bridges: P:K.15, K:R.225, K:K.233
- Hydrogen bonds: K:Q.226
CDL.18: 19 residues within 4Å:- Chain K: F.175
- Chain L: R.159, M.204, A.208, Y.209, M.212, T.213, R.225, Q.226, L.229, F.230, K.233
- Chain Q: K.15, L.20, V.23, F.24, L.31
- Ligands: PLX.17, PLX.19
12 PLIP interactions:5 interactions with chain Q, 6 interactions with chain L, 1 interactions with chain K- Hydrophobic interactions: Q:L.20, Q:V.23, Q:F.24, Q:L.31, L:A.208, K:F.175
- Salt bridges: Q:K.15, L:R.225, L:K.233, L:K.233
- Hydrogen bonds: L:R.159, L:Q.226
CDL.21: 16 residues within 4Å:- Chain M: M.204, Y.209, M.212, T.213, R.225, Q.226, L.229, F.230
- Chain N: F.175
- Chain O: K.15, F.18, L.20, F.24, L.31
- Ligands: PLX.22, PLX.23
10 PLIP interactions:5 interactions with chain O, 1 interactions with chain N, 4 interactions with chain M- Hydrophobic interactions: O:F.18, O:L.20, O:F.24, O:L.31, N:F.175
- Salt bridges: O:K.15, M:R.225, M:K.233
- Hydrogen bonds: M:Q.226, M:Q.226
CDL.25: 20 residues within 4Å:- Chain L: F.175
- Chain N: Y.170, I.198, G.201, A.205, Y.209, M.212, T.213, R.225, Q.226, L.229, F.230, K.233
- Chain R: K.15, F.18, L.20, V.23, F.24, V.27
- Ligands: PLX.26
16 PLIP interactions:7 interactions with chain R, 8 interactions with chain N, 1 interactions with chain L- Hydrophobic interactions: R:K.15, R:F.18, R:L.20, R:V.23, R:F.24, R:V.27, N:Y.170, N:I.198, N:A.205, N:K.233, L:F.175
- Salt bridges: R:K.15, N:R.159, N:R.225, N:K.233
- Hydrogen bonds: N:Q.226
- 16 x PLX: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL(Non-covalent)
PLX.3: 14 residues within 4Å:- Chain A: V.163, L.164, G.166, G.167, M.171, S.202, M.206, Y.209, Y.217, Y.219, Q.226
- Chain B: F.210, E.216
- Ligands: CDL.2
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:V.163, A:L.164, A:Y.209, A:Y.219, B:F.210
- Hydrogen bonds: A:Y.217, A:Y.219, A:Y.219
PLX.4: 3 residues within 4Å:- Chain A: W.183, W.184
- Ligands: CDL.5
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:W.183
PLX.6: 14 residues within 4Å:- Chain B: L.164, G.166, G.167, M.171, S.202, M.206, Y.209, Y.217, Y.219, A.222
- Chain D: A.203, Y.207, E.216
- Ligands: CDL.5
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: B:L.164, B:Y.209, B:Y.217, B:A.222, D:Y.207
- Hydrogen bonds: B:Y.217, B:Y.219
PLX.7: 3 residues within 4Å:- Chain B: W.184
- Chain D: F.197, I.198
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:F.197, D:I.198
PLX.9: 17 residues within 4Å:- Chain A: Y.207, F.210, E.216
- Chain C: L.162, V.163, L.164, G.166, G.167, M.171, S.202, A.205, M.206, Y.209, Y.217, Y.219
- Ligands: CDL.8, PLX.10
11 PLIP interactions:2 interactions with chain A, 9 interactions with chain C- Hydrophobic interactions: A:Y.207, A:F.210, C:L.162, C:L.164, C:A.205, C:Y.209, C:Y.217
- Hydrogen bonds: C:Y.217, C:Y.219, C:Y.219
- pi-Cation interactions: C:Y.219
PLX.10: 9 residues within 4Å:- Chain C: Y.170, F.197, I.198, G.201, S.202
- Chain D: W.183, W.184
- Ligands: CDL.8, PLX.9
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:I.198, D:W.183
PLX.11: 5 residues within 4Å:- Chain A: F.197, I.198
- Chain C: W.183, W.184
- Ligands: CDL.2
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:I.198
PLX.12: 15 residues within 4Å:- Chain C: Y.207
- Chain D: L.162, V.163, L.164, G.166, G.167, M.171, S.202, A.205, M.206, Y.209, Y.217, V.218, Y.219
- Ligands: CDL.13
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:V.163, D:V.163, D:L.164, D:A.205, D:Y.209, D:Y.209, D:Y.219
- Hydrogen bonds: D:Y.217, D:Y.219
- pi-Cation interactions: D:Y.219
PLX.16: 14 residues within 4Å:- Chain K: V.163, L.164, G.166, G.167, M.171, S.202, M.206, Y.209, Y.217, Y.219, Q.226
- Chain L: F.210, E.216
- Ligands: CDL.15
8 PLIP interactions:7 interactions with chain K, 1 interactions with chain L- Hydrophobic interactions: K:V.163, K:L.164, K:Y.209, K:Y.219, L:F.210
- Hydrogen bonds: K:Y.217, K:Y.219, K:Y.219
PLX.17: 3 residues within 4Å:- Chain K: W.183, W.184
- Ligands: CDL.18
1 PLIP interactions:1 interactions with chain K- Hydrophobic interactions: K:W.183
PLX.19: 14 residues within 4Å:- Chain L: L.164, G.166, G.167, M.171, S.202, M.206, Y.209, Y.217, Y.219, A.222
- Chain N: A.203, Y.207, E.216
- Ligands: CDL.18
7 PLIP interactions:6 interactions with chain L, 1 interactions with chain N- Hydrophobic interactions: L:L.164, L:Y.209, L:Y.217, L:A.222, N:Y.207
- Hydrogen bonds: L:Y.217, L:Y.219
PLX.20: 3 residues within 4Å:- Chain L: W.184
- Chain N: F.197, I.198
2 PLIP interactions:2 interactions with chain N- Hydrophobic interactions: N:F.197, N:I.198
PLX.22: 17 residues within 4Å:- Chain K: Y.207, F.210, E.216
- Chain M: L.162, V.163, L.164, G.166, G.167, M.171, S.202, A.205, M.206, Y.209, Y.217, Y.219
- Ligands: CDL.21, PLX.23
11 PLIP interactions:2 interactions with chain K, 9 interactions with chain M- Hydrophobic interactions: K:Y.207, K:F.210, M:L.162, M:L.164, M:A.205, M:Y.209, M:Y.217
- Hydrogen bonds: M:Y.217, M:Y.219, M:Y.219
- pi-Cation interactions: M:Y.219
PLX.23: 9 residues within 4Å:- Chain M: Y.170, F.197, I.198, G.201, S.202
- Chain N: W.183, W.184
- Ligands: CDL.21, PLX.22
2 PLIP interactions:1 interactions with chain N, 1 interactions with chain M- Hydrophobic interactions: N:W.183, M:I.198
PLX.24: 4 residues within 4Å:- Chain K: F.197, I.198
- Chain M: W.183, W.184
1 PLIP interactions:1 interactions with chain K- Hydrophobic interactions: K:I.198
PLX.26: 15 residues within 4Å:- Chain M: Y.207
- Chain N: L.162, V.163, L.164, G.166, G.167, M.171, S.202, A.205, M.206, Y.209, Y.217, V.218, Y.219
- Ligands: CDL.25
10 PLIP interactions:10 interactions with chain N- Hydrophobic interactions: N:V.163, N:V.163, N:L.164, N:A.205, N:Y.209, N:Y.209, N:Y.219
- Hydrogen bonds: N:Y.217, N:Y.219
- pi-Cation interactions: N:Y.219
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhuo, W. et al., Structure of intact human MCU supercomplex with the auxiliary MICU subunits. Protein Cell (2021)
- Release Date
- 2020-09-09
- Peptides
- Calcium uniporter protein, mitochondrial: ABCDKLMN
Essential MCU regulator, mitochondrial: EFGHOPQR
Calcium uptake protein 1, mitochondrial: IS
Calcium uptake protein 2, mitochondrial: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DK
NL
OM
PN
QE
EF
FG
GH
HO
RP
SQ
TR
UI
IS
VJ
JT
W - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.60 Å
- Oligo State
- hetero-8-8-2-2-mer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 8 x CDL: CARDIOLIPIN(Non-covalent)
- 16 x PLX: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhuo, W. et al., Structure of intact human MCU supercomplex with the auxiliary MICU subunits. Protein Cell (2021)
- Release Date
- 2020-09-09
- Peptides
- Calcium uniporter protein, mitochondrial: ABCDKLMN
Essential MCU regulator, mitochondrial: EFGHOPQR
Calcium uptake protein 1, mitochondrial: IS
Calcium uptake protein 2, mitochondrial: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DK
NL
OM
PN
QE
EF
FG
GH
HO
RP
SQ
TR
UI
IS
VJ
JT
W - Membrane
-
We predict this structure to be a membrane protein.