SMTL ID : 6k8s.1

Crystal structure of C-domain of baterial malonyl-CoA reductase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.157, L.160, D.161, V.165, R.566, V.569, A.570, T.574 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.574 Water bridges: A:R.566 GOL.7: 8 residues within 4Å: Chain B: D.157, L.160, D.161, V.165, R.566, V.569, A.570, T.574 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.566 Water bridges: B:D.157, B:D.157

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Q.347, R.581, R.582 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.347 Water bridges: A:R.581, A:R.581, A:R.581, A:R.581 Salt bridges: A:R.581, A:R.582 SO4.3: 4 residues within 4Å: Chain A: K.261, P.378, F.379, L.380 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.379, A:L.380 Salt bridges: A:K.261 SO4.4: 2 residues within 4Å: Chain A: K.45, R.422 5 PLIP interactions: 5 interactions with chain A Water bridges: A:L.41, A:A.420, A:R.422 Salt bridges: A:K.45, A:R.422 SO4.5: 5 residues within 4Å: Chain A: R.282, N.307, P.308, R.309, R.312 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.309 Salt bridges: A:R.282, A:R.309, A:R.312 SO4.6: 6 residues within 4Å: Chain A: A.142, Y.203, R.206, Y.209, R.245, L.255 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.245 Salt bridges: A:R.206, A:R.245 SO4.8: 3 residues within 4Å: Chain B: Q.347, R.581, R.582 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.347 Water bridges: B:R.581, B:R.581, B:R.581 Salt bridges: B:R.581, B:R.582 SO4.9: 2 residues within 4Å: Chain B: K.45, R.422 5 PLIP interactions: 5 interactions with chain B Water bridges: B:K.45, B:K.45, B:A.420 Salt bridges: B:K.45, B:R.422 SO4.10: 6 residues within 4Å: Chain B: A.142, Y.203, R.206, Y.209, R.245, L.255 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.245 Salt bridges: B:R.206, B:R.245 SO4.11: 4 residues within 4Å: Chain B: K.261, P.378, F.379, L.380 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.379, B:L.380 Salt bridges: B:K.261 SO4.12: 5 residues within 4Å: Chain B: R.282, N.307, P.308, R.309, R.312 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.309 Salt bridges: B:R.282, B:R.309, B:R.312 SO4.13: 3 residues within 4Å: Chain B: E.659, R.662, R.666 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.662, B:R.666 SO4.14: 5 residues within 4Å: Chain B: G.51, S.53, A.75, R.76, R.77 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.51, B:S.53, B:S.53, B:R.76, B:R.77 Water bridges: B:G.51, B:A.54 Salt bridges: B:R.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Son, H.F. et al., Structural insight into bi-functional malonyl-CoA reductase. Environ.Microbiol. (2020)

Release Date

2020-03-18

Peptides

NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR

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